CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93247
KRH03754
KRH03906
KRH11866
KRH25124
KRH26350
KRH30550
KRH36887
KRH42252
KRH44087
KRH48835
KRH56563
KRH56652
KRH57185
KRH57190
KRH58370
KRH66485
KRH75956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	KRH03754	AT1G52730.1	20706207
AT3G50070.1	KRH56652	AT1G52730.1	20706207
AT3G50070.1	KRH25124	AT2G27970.1	20706207
AT3G50070.1	KRH30550	AT2G27970.1	20706207
AT3G50070.1	KRH11866	AT3G48750.1	20706207
AT3G50070.1	KRH36887	AT3G48750.1	20706207
AT3G50070.1	KRH42252	AT3G48750.1	20706207
AT3G50070.1	KRH58370	AT3G48750.1	20706207
AT3G50070.1	KRH75956	AT3G60750.1	20706207
AT3G50070.1	KRH48835	AT4G09320.1	20706207
AT3G50070.1	KRH66485	AT4G09320.1	20706207
AT3G50070.1	KRH03906	AT4G24820.1	20706207
AT3G50070.1	KRH57185	AT4G24820.1	20706207
AT3G50070.1	KRH57190	AT4G24820.1	20706207
AT3G50070.1	KRH26350	AT5G06110.1	20706207
AT3G50070.1	KRH44087	AT5G06110.1	20706207
AT3G50070.1	KRG93247	AT5G40460.1	20706207
AT3G50070.1	KRH56563	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28424	Soybean	nucleus	86.53	86.27
KRH04529	Soybean	nucleus	64.07	57.68
KRH57973	Soybean	nucleus	63.77	55.61
PGSC0003DMT400011487	Potato	nucleus	25.45	46.2
CDY30607	Canola	nucleus	47.6	45.04
CDY23022	Canola	nucleus	44.01	44.68
CDY01425	Canola	nucleus	47.31	44.63
Bra036051.1-P	Field mustard	nucleus	47.01	44.48
Bra012146.1-P	Field mustard	nucleus	47.01	44.35
AT3G50070.1	Thale cress	nucleus	47.9	44.32
CDY02095	Canola	nucleus	43.11	43.9
Bra012909.1-P	Field mustard	nucleus	43.11	43.9
CDY12825	Canola	nucleus	47.01	43.85
PGSC0003DMT400064307	Potato	nucleus	47.31	43.53
CDX83112	Canola	nucleus	45.81	43.47
Bra029992.1-P	Field mustard	nucleus	45.81	43.47
CDY17742	Canola	nucleus	46.11	43.38
CDX68573	Canola	nucleus	45.51	43.18
Solyc02g092980.2.1	Tomato	nucleus	46.41	43.18
PGSC0003DMT400031329	Potato	nucleus	41.62	43.17
KRG90996	Soybean	nucleus	48.8	41.48
KRH52038	Soybean	nucleus	44.91	41.44
KRH61348	Soybean	nucleus	43.11	41.26
PGSC0003DMT400068629	Potato	cytosol	28.44	39.58
KRH35760	Soybean	nucleus	47.31	39.3
Solyc02g064900.1.1	Tomato	nucleus	40.42	39.02
AT5G67260.2	Thale cress	nucleus	45.81	37.87
KRH15412	Soybean	cytosol	29.64	36.67
KRH05626	Soybean	cytosol	23.05	35.81
PGSC0003DMT400068627	Potato	nucleus	32.93	35.71
Solyc02g064860.1.1	Tomato	nucleus	24.85	35.32
Solyc02g064910.1.1	Tomato	nucleus	24.25	34.47
CDY30606	Canola	cytosol, nucleus, plastid	17.07	33.14
GSMUA_Achr1P09780_001	Banana	cytosol	36.53	31.44
GSMUA_Achr2P05260_001	Banana	nucleus	31.74	30.72
KRH69654	Soybean	cytosol	21.86	30.04
KRH35652	Soybean	nucleus	26.95	29.8
GSMUA_AchrUn_...	Banana	cytosol	27.84	29.34
KRH69476	Soybean	nucleus	29.64	29.2
KRH16827	Soybean	nucleus	30.84	29.01
GSMUA_Achr3P13140_001	Banana	nucleus	35.33	28.99
GSMUA_Achr4P20220_001	Banana	nucleus	30.84	28.45
KRH62196	Soybean	nucleus	29.94	28.41
KRH72435	Soybean	nucleus	30.24	28.29
KRH74510	Soybean	nucleus	30.54	28.25
HORVU5Hr1G050270.8	Barley	cytosol	29.64	28.21
KRH52917	Soybean	nucleus	29.64	28.12
KRG91131	Soybean	nucleus	27.25	28.09
KRH45568	Soybean	nucleus	29.04	28.03
GSMUA_Achr3P01010_001	Banana	nucleus	34.13	28.01
TraesCS5D01G165900.1	Wheat	cytosol	29.64	27.97
TraesCS5A01G161000.1	Wheat	cytosol	29.34	27.68
TraesCS5B01G158400.1	Wheat	cytosol	29.34	27.68
Os09t0111100-01	Rice	cytosol	29.94	27.47
KRH58137	Soybean	nucleus	25.75	27.04
KRG99448	Soybean	nucleus	28.74	26.82
KRH26876	Soybean	nucleus	25.15	26.67
Zm00001d019696_P001	Maize	cytosol	30.84	26.61
KRH22479	Soybean	cytosol	25.15	26.58
KRG99255	Soybean	nucleus	27.54	26.44
KRH61407	Soybean	nucleus	24.55	26.28
KRH45743	Soybean	nucleus	27.84	25.83
EER96424	Sorghum	cytosol	29.34	25.65
KRH04404	Soybean	vacuole	26.05	25.59
KRH52092	Soybean	nucleus	23.65	25.16
KRH74675	Soybean	nucleus, plastid	28.44	24.87
Zm00001d005293_P001	Maize	cytosol	29.04	24.81
KRH25470	Soybean	nucleus	23.95	24.69
KRH56054	Soybean	cytosol, nucleus, plasma membrane	23.95	24.32
KRH21593	Soybean	nucleus	18.26	22.43
KRH10729	Soybean	nucleus	18.26	22.43
KRH28363	Soybean	nucleus	22.16	22.36
KRH65892	Soybean	cytosol	19.16	22.22
KRH77118	Soybean	nucleus	21.86	21.99
KRH75669	Soybean	cytosol	18.56	21.45
KRH54628	Soybean	cytosol	8.68	18.95
KRH54622	Soybean	cytosol	8.68	18.95

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100802683	MapMan:13.1.1.1.4	EMBL:ACUP02000654	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_01G189700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:I1J9A4	EnsemblPlants:KRH77050	ProteinID:KRH77050	ProteinID:KRH77050.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF216	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI00023377D1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:52466361..52468541

Molecular Weight (calculated)

38162.0 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.163

Length

334 amino acids

Sequence
(BLAST)

001: MPQPHSPSFL LCQQHYSFSF QQHSQTLTPP SPFTFPDNHQ HDHLLSLLSK QRATHSSFSP RHDVVRWIST VSDFHAFAPL TTVLAVNYFD RFVTTLRFQS
101: EQKPWMTHLA ALACVSLAAK VEETRVPLLF DFQVGESKFL FEAKTIQKME LLVLSTLEWK MNPVTPISFF QHFLARLGLK RHLHSEFLCR CQRLLLSVIA
201: DSRVMSYLPS TLAAAIMIHI IKEIEPLNAT EYQNQLPGLL KTSEEQVNEC YKLILGLYVC SNGIHNLRRK RLSEPSSSPD GVIDASFSCD SSNDSWTVAS
301: PSVEPVFKRR KPQDQQMRLP SVNRVVIDVL NTPR

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.