Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plasma membrane 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH69654 | Soybean | cytosol | 56.23 | 83.54 |
KRH45568 | Soybean | nucleus | 57.06 | 59.54 |
KRG99448 | Soybean | nucleus | 57.06 | 57.54 |
Solyc11g010460.1.1 | Tomato | cytosol | 49.03 | 56.73 |
Solyc05g051410.2.1 | Tomato | nucleus | 53.19 | 55.81 |
PGSC0003DMT400037827 | Potato | nucleus | 52.91 | 55.52 |
VIT_00s0199g00210.t01 | Wine grape | nucleus | 52.63 | 53.82 |
GSMUA_Achr3P06730_001 | Banana | nucleus | 48.75 | 50.72 |
GSMUA_Achr6P02210_001 | Banana | plastid | 34.9 | 50.6 |
Bra038518.1-P | Field mustard | nucleus | 40.44 | 50.34 |
KRH16827 | Soybean | nucleus | 49.31 | 50.14 |
KRH72435 | Soybean | nucleus | 49.58 | 50.14 |
KRH52917 | Soybean | nucleus | 48.75 | 50.0 |
CDY13755 | Canola | nucleus | 40.44 | 50.0 |
GSMUA_Achr8P23430_001 | Banana | nucleus | 47.92 | 49.86 |
GSMUA_Achr10P... | Banana | nucleus | 43.49 | 48.91 |
KRH62196 | Soybean | nucleus | 47.37 | 48.58 |
GSMUA_Achr9P15070_001 | Banana | nucleus | 47.09 | 48.57 |
AT5G10440.1 | Thale cress | nucleus | 39.89 | 48.32 |
PGSC0003DMT400041637 | Potato | nucleus | 52.63 | 48.22 |
CDX81286 | Canola | nucleus | 35.46 | 48.12 |
GSMUA_Achr5P17920_001 | Banana | nucleus | 45.98 | 47.98 |
GSMUA_Achr10P... | Banana | nucleus | 45.71 | 47.97 |
GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 47.37 | 47.77 |
Bra024383.1-P | Field mustard | nucleus | 40.44 | 47.4 |
CDY54717 | Canola | nucleus | 34.9 | 47.37 |
GSMUA_Achr5P22980_001 | Banana | nucleus | 45.71 | 47.28 |
AT5G65420.3 | Thale cress | nucleus | 41.55 | 47.17 |
Bra009031.1-P | Field mustard | nucleus | 38.78 | 47.14 |
CDX97009 | Canola | nucleus | 38.23 | 47.1 |
CDY08795 | Canola | nucleus | 40.17 | 47.08 |
CDX69832 | Canola | nucleus | 38.5 | 46.8 |
Bra031858.1-P | Field mustard | nucleus | 38.5 | 46.49 |
CDY33959 | Canola | nucleus | 39.06 | 46.23 |
GSMUA_Achr7P12850_001 | Banana | nucleus | 45.98 | 45.98 |
Bra037817.1-P | Field mustard | nucleus | 35.46 | 45.39 |
CDY37828 | Canola | nucleus | 38.5 | 44.98 |
CDY14561 | Canola | cytosol | 40.44 | 44.92 |
Bra030232.1-P | Field mustard | nucleus | 44.04 | 44.79 |
CDY25602 | Canola | nucleus | 44.04 | 44.66 |
CDX76917 | Canola | nucleus | 43.21 | 44.07 |
CDX89480 | Canola | nucleus | 43.21 | 43.94 |
HORVU6Hr1G077500.1 | Barley | nucleus | 42.66 | 43.87 |
TraesCS6B01G345300.1 | Wheat | plastid | 42.66 | 43.63 |
AT2G22490.2 | Thale cress | nucleus | 42.66 | 42.54 |
TraesCS6A01G314900.1 | Wheat | nucleus | 42.11 | 42.46 |
Zm00001d018128_P001 | Maize | nucleus | 40.17 | 40.85 |
Zm00001d052185_P001 | Maize | nucleus | 40.72 | 40.83 |
EES07560 | Sorghum | nucleus | 39.34 | 39.66 |
KXG19603 | Sorghum | nucleus | 36.84 | 38.22 |
TraesCS6D01G294200.1 | Wheat | nucleus | 26.32 | 37.7 |
KRH35652 | Soybean | nucleus | 28.53 | 34.11 |
KRH69476 | Soybean | nucleus | 31.86 | 33.92 |
KRH05626 | Soybean | cytosol | 19.39 | 32.56 |
KRG91131 | Soybean | nucleus | 28.81 | 32.1 |
KRH28424 | Soybean | nucleus | 29.36 | 31.64 |
KRG99255 | Soybean | nucleus | 29.92 | 31.03 |
KRH61407 | Soybean | nucleus | 26.59 | 30.77 |
KRH45743 | Soybean | nucleus | 30.47 | 30.56 |
KRH77050 | Soybean | nucleus, plastid | 28.25 | 30.54 |
KRH58137 | Soybean | nucleus | 26.59 | 30.19 |
KRH52038 | Soybean | nucleus | 30.19 | 30.11 |
KRH61348 | Soybean | nucleus | 29.09 | 30.09 |
KRH52092 | Soybean | nucleus | 25.76 | 29.62 |
KRH54622 | Soybean | cytosol | 12.47 | 29.41 |
KRH54628 | Soybean | cytosol | 12.47 | 29.41 |
KRH04529 | Soybean | nucleus | 29.92 | 29.11 |
KRH74675 | Soybean | nucleus, plastid | 30.19 | 28.53 |
KRH04404 | Soybean | vacuole | 26.87 | 28.53 |
KRH21593 | Soybean | nucleus | 21.05 | 27.94 |
KRH57973 | Soybean | nucleus | 29.64 | 27.94 |
KRH22479 | Soybean | cytosol | 24.38 | 27.85 |
KRH15412 | Soybean | cytosol | 20.78 | 27.78 |
KRH26876 | Soybean | nucleus | 24.1 | 27.62 |
KRH65892 | Soybean | cytosol | 21.88 | 27.43 |
KRH75669 | Soybean | cytosol | 21.88 | 27.34 |
KRH10729 | Soybean | nucleus | 20.5 | 27.21 |
KRH28363 | Soybean | nucleus | 24.38 | 26.59 |
KRG90996 | Soybean | nucleus | 28.81 | 26.46 |
KRH25470 | Soybean | nucleus | 23.55 | 26.23 |
KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 23.82 | 26.14 |
KRH35760 | Soybean | nucleus | 28.25 | 25.37 |
KRH77118 | Soybean | nucleus | 22.99 | 25.0 |
Protein Annotations
Gene3D:1.10.472.10 | EntrezGene:100794010 | MapMan:13.1.1.1.4 | EMBL:ACUP02000040 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlantsGene:GLYMA_01G024700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | UniProt:I1J524 | EnsemblPlants:KRH74510 | ProteinID:KRH74510 | ProteinID:KRH74510.1 | PFAM:PF00134 |
PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 |
SUPFAM:SSF47954 | UniParc:UPI0002966BA0 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:2529244..2531919
Molecular Weight (calculated)
39525.4 Da
IEP (calculated)
4.827
GRAVY (calculated)
0.052
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHNSDSATS NLLLCSENSS TCFDDDLECC DAADGSNSRI SHQFWDHHEG GGGGGSELLA CFVAQSEETV RAMVEREREH LPRDDYLMRL RSGELDLGVR
101: REAIDWICKA HSYFGFGPLS FCLAVNYLDR FLSVFDLPRG VTWTVQLLAV ACLSIAAKME EIKVPQSVDL QVGEPKFVFE ARTIQKMELL VLSTLGWKMC
201: AITPCSFIDY FLGKITCEQH PAKSSVSISV QLILGIIMGI DYLEFRPSEI AAAVAVSVLK ELQAIEIDKA IIDLLVVEKW RVLKCVELIR DLSLINVAAS
301: LGSKVPYVPQ SPIGVLDAGC LSYKSDELTV GSCPNSSHNI SNPNPTKRSK PDGPSNGTSN S
101: REAIDWICKA HSYFGFGPLS FCLAVNYLDR FLSVFDLPRG VTWTVQLLAV ACLSIAAKME EIKVPQSVDL QVGEPKFVFE ARTIQKMELL VLSTLGWKMC
201: AITPCSFIDY FLGKITCEQH PAKSSVSISV QLILGIIMGI DYLEFRPSEI AAAVAVSVLK ELQAIEIDKA IIDLLVVEKW RVLKCVELIR DLSLINVAAS
301: LGSKVPYVPQ SPIGVLDAGC LSYKSDELTV GSCPNSSHNI SNPNPTKRSK PDGPSNGTSN S
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.