Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052185_P001 | Maize | nucleus | 92.74 | 92.22 |
| Zm00001d018128_P001 | Maize | nucleus | 90.78 | 91.55 |
| TraesCS6B01G345300.1 | Wheat | plastid | 74.86 | 75.92 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 53.07 | 75.4 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 75.14 | 75.14 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 73.46 | 74.93 |
| GSMUA_Achr10P... | Banana | nucleus | 49.44 | 55.14 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 51.96 | 53.14 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 36.87 | 53.01 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 52.79 | 52.79 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 51.4 | 52.72 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 50.56 | 52.31 |
| KXG19603 | Sorghum | nucleus | 50.84 | 52.3 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 50.28 | 51.87 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 50.0 | 51.59 |
| GSMUA_Achr10P... | Banana | nucleus | 48.88 | 50.87 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 50.42 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 50.56 | 50.14 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 48.04 | 48.73 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 48.04 | 48.45 |
| EER96886 | Sorghum | nucleus | 50.56 | 47.88 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 47.77 | 47.11 |
| EER97558 | Sorghum | nucleus | 45.25 | 46.96 |
| EES14027 | Sorghum | nucleus | 48.88 | 46.92 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 46.65 | 46.91 |
| KRH16827 | Soybean | nucleus | 46.37 | 46.76 |
| KRH72435 | Soybean | nucleus | 46.37 | 46.5 |
| Solyc04g076040.2.1 | Tomato | nucleus | 44.69 | 45.07 |
| Bra038518.1-P | Field mustard | nucleus | 36.31 | 44.83 |
| Solyc11g010460.1.1 | Tomato | cytosol | 38.83 | 44.55 |
| CDY13755 | Canola | nucleus | 36.31 | 44.52 |
| KRH62196 | Soybean | nucleus | 43.3 | 44.03 |
| PGSC0003DMT400033588 | Potato | nucleus | 43.58 | 43.82 |
| KRH52917 | Soybean | nucleus | 43.02 | 43.75 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 42.74 | 43.34 |
| CDY54717 | Canola | nucleus | 32.12 | 43.23 |
| AT5G10440.1 | Thale cress | nucleus | 35.75 | 42.95 |
| CDX81286 | Canola | nucleus | 31.56 | 42.48 |
| KRH45568 | Soybean | nucleus | 40.78 | 42.2 |
| KRG99448 | Soybean | nucleus | 42.18 | 42.18 |
| Solyc12g087900.1.1 | Tomato | nucleus | 37.15 | 42.09 |
| Bra037817.1-P | Field mustard | nucleus | 32.68 | 41.49 |
| KRH69654 | Soybean | cytosol | 27.93 | 41.15 |
| Bra031858.1-P | Field mustard | nucleus | 34.36 | 41.14 |
| PGSC0003DMT400037827 | Potato | nucleus | 39.39 | 40.99 |
| AT5G65420.3 | Thale cress | nucleus | 36.31 | 40.88 |
| PGSC0003DMT400088718 | Potato | nucleus | 35.2 | 40.65 |
| CDY08795 | Canola | nucleus | 34.92 | 40.58 |
| CDX97009 | Canola | nucleus | 32.96 | 40.27 |
| Bra024383.1-P | Field mustard | nucleus | 34.64 | 40.26 |
| CDX69832 | Canola | nucleus | 32.96 | 39.73 |
| Bra009031.1-P | Field mustard | nucleus | 32.96 | 39.73 |
| CDY33959 | Canola | nucleus | 33.8 | 39.67 |
| Solyc05g051410.2.1 | Tomato | nucleus | 37.99 | 39.53 |
| CDY37828 | Canola | nucleus | 34.08 | 39.48 |
| KRH74510 | Soybean | nucleus | 39.66 | 39.34 |
| AT2G22490.2 | Thale cress | nucleus | 39.39 | 38.95 |
| OQU92473 | Sorghum | nucleus | 37.15 | 38.44 |
| CDX76917 | Canola | nucleus | 37.99 | 38.42 |
| CDY14561 | Canola | cytosol | 34.64 | 38.15 |
| CDX89480 | Canola | nucleus | 37.43 | 37.75 |
| Bra030232.1-P | Field mustard | nucleus | 37.15 | 37.46 |
| CDY25602 | Canola | nucleus | 37.15 | 37.36 |
| PGSC0003DMT400041637 | Potato | nucleus | 40.5 | 36.8 |
| OQU89443 | Sorghum | nucleus | 31.28 | 33.63 |
| EER99528 | Sorghum | cytosol | 25.42 | 28.98 |
| EES17294 | Sorghum | nucleus | 24.02 | 23.69 |
| EER92677 | Sorghum | nucleus | 23.46 | 23.66 |
| EER91226 | Sorghum | nucleus | 24.3 | 23.51 |
| EER96424 | Sorghum | cytosol | 24.58 | 23.04 |
| OQU84124 | Sorghum | nucleus | 22.91 | 19.2 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:8078902 | UniProt:C5XSR8 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | EnsemblPlants:EES07560 | ProteinID:EES07560 | ProteinID:EES07560.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | EnsemblPlantsGene:SORBI_3004G305700 | SUPFAM:SSF47954 |
| unigene:Sbi.2834 | UniParc:UPI0001A8610C | RefSeq:XP_002454584.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:-:64409178..64411746
Molecular Weight (calculated)
39071.8 Da
IEP (calculated)
5.815
GRAVY (calculated)
0.043
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPGYDCAAS VLLCAEDNAA ILGLDEEGEE SSWAAAATPP RDTVVAAAAT GIAVDGFLTE LPLLSDECVA ALVEREVEHM PAEGYPQKLQ RRHGDLDLAA
101: VRKDAVDWIW KVTEHYNFAP LTAVLSVNYL DRFLSTYEFP EDRAWMTQLL AVACLSLASK MEETFVPLPL DLQVAETRFV FEGRTIRRME LHVLSTLKWR
201: MHAVTACSFV EHFLHKLSDH GAPSLLARSR SSDLVLSTAK GAEFVVFRPS EIAASVALAA MGECRSSVIE RAASSCKYLN KERVLRCHEL IQEKITMGSI
301: VLKSAGSSIS SVPQSPIGVL DAASCLSQQS DDATGGSPAV CYHSSSTSKR RRITRRLL
101: VRKDAVDWIW KVTEHYNFAP LTAVLSVNYL DRFLSTYEFP EDRAWMTQLL AVACLSLASK MEETFVPLPL DLQVAETRFV FEGRTIRRME LHVLSTLKWR
201: MHAVTACSFV EHFLHKLSDH GAPSLLARSR SSDLVLSTAK GAEFVVFRPS EIAASVALAA MGECRSSVIE RAASSCKYLN KERVLRCHEL IQEKITMGSI
301: VLKSAGSSIS SVPQSPIGVL DAASCLSQQS DDATGGSPAV CYHSSSTSKR RRITRRLL
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.