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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • nucleus 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, secretory
iPSORT:secretory
MultiLoc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G151400.1
TraesCS1B01G168900.1
TraesCS1D01G148400.2
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G332500.1
TraesCS4D01G347600.1
TraesCS5A01G240600.1
TraesCS5A01G506500.1
TraesCS5A01G521700.1
TraesCS5B01G238600.1
TraesCS5D01G247100.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G10440.1 TraesCS4A01G410900.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4B01G311000.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4D01G308900.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4A01G410900.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS4B01G311000.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS4D01G308900.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS1A01G151400.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS1B01G168900.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS1D01G148400.2 AT2G32710.1 20706207
AT5G10440.1 TraesCS4D01G332500.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS5A01G506500.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS5A01G240600.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS5B01G238600.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS5D01G247100.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS4B01G353600.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS4D01G347600.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS5A01G521700.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS6A01G078200.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS6B01G105100.1 AT3G48750.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G294200.1 Wheat nucleus 68.99 98.02
TraesCS6B01G345300.1 Wheat plastid 95.81 97.17
HORVU6Hr1G077500.1 Barley nucleus 94.41 96.3
Zm00001d018128_P001 Maize nucleus 75.42 76.06
Zm00001d052185_P001 Maize nucleus 75.7 75.28
EES07560 Sorghum nucleus 75.14 75.14
GSMUA_Achr7P19040_001 Banana cytosol, endoplasmic reticulum, nucleus 55.87 55.87
GSMUA_Achr10P... Banana nucleus 50.0 55.76
GSMUA_Achr9P15070_001 Banana nucleus 54.19 55.43
GSMUA_Achr3P06730_001 Banana nucleus 53.63 55.33
GSMUA_Achr6P02210_001 Banana plastid 38.27 55.02
GSMUA_Achr8P23430_001 Banana nucleus 53.07 54.76
GSMUA_Achr10P... Banana nucleus 51.96 54.07
GSMUA_Achr5P17920_001 Banana nucleus 51.96 53.76
GSMUA_Achr5P22980_001 Banana nucleus 52.23 53.58
GSMUA_Achr10P... Banana nucleus 51.68 52.11
GSMUA_Achr7P12850_001 Banana nucleus 52.23 51.8
GSMUA_Achr3P21210_001 Banana nucleus 49.72 50.42
VIT_18s0001g07220.t01 Wine grape nucleus 50.0 50.42
Solyc11g010460.1.1 Tomato cytosol 42.74 49.04
GSMUA_Achr2P22330_001 Banana nucleus 48.32 48.6
KRH16827 Soybean nucleus 47.21 47.61
TraesCS5A01G246800.1 Wheat nucleus 46.93 47.59
KRH45568 Soybean nucleus 45.53 47.11
GSMUA_Achr6P10260_001 Banana cytosol 47.49 46.83
KRH72435 Soybean nucleus 46.65 46.78
TraesCS5A01G247000.1 Wheat nucleus 46.37 46.76
Solyc04g076040.2.1 Tomato nucleus 45.81 46.2
TraesCS2A01G164800.1 Wheat nucleus 43.85 45.51
CDY54717 Canola nucleus 33.8 45.49
PGSC0003DMT400033588 Potato nucleus 44.97 45.22
KRG99448 Soybean nucleus 44.97 44.97
CDX81286 Canola nucleus 33.24 44.74
KRH62196 Soybean nucleus 43.85 44.6
Solyc12g087900.1.1 Tomato nucleus 39.11 44.3
Bra038518.1-P Field mustard nucleus 35.75 44.14
KRH52917 Soybean nucleus 43.3 44.03
PGSC0003DMT400037827 Potato nucleus 42.18 43.9
CDY13755 Canola nucleus 35.75 43.84
Bra031858.1-P Field mustard nucleus 36.59 43.81
VIT_00s0199g00210.t01 Wine grape nucleus 43.02 43.63
KRH69654 Soybean cytosol 29.61 43.62
AT5G65420.3 Thale cress nucleus 38.55 43.4
Solyc05g051410.2.1 Tomato nucleus 41.62 43.31
Bra037817.1-P Field mustard nucleus 34.08 43.26
AT5G10440.1 Thale cress nucleus 35.75 42.95
CDY33959 Canola nucleus 36.59 42.95
PGSC0003DMT400088718 Potato nucleus 37.15 42.9
CDY37828 Canola nucleus 36.59 42.39
CDY08795 Canola nucleus 36.31 42.21
KRH74510 Soybean nucleus 42.46 42.11
Bra024383.1-P Field mustard nucleus 36.03 41.88
CDX97009 Canola nucleus 33.8 41.3
Bra009031.1-P Field mustard nucleus 33.8 40.74
CDX69832 Canola nucleus 33.52 40.4
PGSC0003DMT400041637 Potato nucleus 43.85 39.85
CDY14561 Canola cytosol 36.03 39.69
AT2G22490.2 Thale cress nucleus 39.11 38.67
Bra030232.1-P Field mustard nucleus 38.27 38.59
CDY25602 Canola nucleus 38.27 38.48
CDX89480 Canola nucleus 37.99 38.31
CDX76917 Canola nucleus 37.43 37.85
TraesCS5A01G200500.2 Wheat nucleus 31.84 35.19
TraesCS2A01G208300.1 Wheat nucleus, peroxisome, plasma membrane 25.98 30.0
TraesCS4A01G234600.1 Wheat cytosol 24.86 26.41
TraesCS5A01G068600.1 Wheat nucleus 25.42 25.93
TraesCS4A01G177400.1 Wheat cytosol 24.02 25.83
TraesCS4A01G046900.1 Wheat nucleus 25.14 25.64
TraesCS5A01G161000.1 Wheat cytosol 24.3 24.58
TraesCS7A01G479000.1 Wheat cytosol, nucleus, plastid 6.15 18.33
Protein Annotations
EnsemblPlants:TraesCS6A01G314900.1EnsemblPlantsGene:TraesCS6A01G314900Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF337PFAM:PF00134PFAM:PF02984ScanProsite:PS00292SEG:segSMART:SM00385
SMART:SM01332SUPFAM:SSF47954TIGR:cd00043MapMan:13.1.1.1.4::
Description
No Description!
Coordinates
chr6A:+:551638665..551640485
Molecular Weight (calculated)
38583.1 Da
IEP (calculated)
4.781
GRAVY (calculated)
0.138
Length
358 amino acids
Sequence
(BLAST)
001: MVPSGYDCAA SVLLCAEDNA AILGLDDDED DCSWAAAAAG AGATTPPRVA ADAAAAAEGF LVDHPVQSDE CVAALVATEK EHMPADGYPQ MLQRRAGALD
101: LAAVRRDAVD WIWKVIEHFN FAPLTAVLSV NYLDRFFSVY PLPEGKAWVT QLLAVACLSL ASKMEETYVP LPVDLQVVEA TSAFEGRTIK RMELLVLSTL
201: KWRMQAVTAC SFIDYFLRKF NDHDAPSMLA FSRSTDLILS TAKGADFLVF RPSEIAASVA LAAFGERNTS VVERATTTCK YINKERVLRC YELIQDKIAM
301: GTIVLKSAGS SMFSVPQSPI GVLDAAACLS QQSDDTAVGS PATCYQASSA SKRRRIGR
Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.