Factsheet for TraesCS5A01G247000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G246800.1	Wheat	nucleus	94.65	95.18
TraesCS5B01G243900.1	Wheat	nucleus	91.55	91.55
TraesCS5B01G244100.1	Wheat	nucleus	91.55	90.28
EER96886	Sorghum	nucleus	69.01	64.81
Os09t0466100-01	Rice	nucleus	64.79	64.61
Zm00001d005928_P002	Maize	nucleus	64.79	63.71
HORVU7Hr1G033350.3	Barley	cytosol	53.52	63.12
HORVU0Hr1G013250.1	Barley	cytosol	34.93	57.94
TraesCS6A01G314900.1	Wheat	nucleus	46.76	46.37
TraesCS2A01G164800.1	Wheat	nucleus	37.46	38.55
TraesCS5A01G200500.2	Wheat	nucleus	32.96	36.11
TraesCS5A01G161000.1	Wheat	cytosol	28.73	28.81
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	24.23	27.74
TraesCS4A01G046900.1	Wheat	nucleus	26.48	26.78
TraesCS4A01G177400.1	Wheat	cytosol	25.07	26.73
TraesCS5A01G068600.1	Wheat	nucleus	25.92	26.21
TraesCS4A01G234600.1	Wheat	cytosol	23.94	25.22
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	6.2	18.33

Protein Annotations

EnsemblPlants:TraesCS5A01G247000.1	EnsemblPlantsGene:TraesCS5A01G247000	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF339	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr5A:-:461229652..461231847

Molecular Weight (calculated)

38358.7 Da

IEP (calculated)

5.663

GRAVY (calculated)

-0.041

Length

355 amino acids

Sequence
(BLAST)

001: MAPSYEMAAS ILLCAEDSSS IFGFGDEQEA AAGARASRSP YCGGELAVEF PLPSEECVAR WVATEAEHMP REDYAERLRA GGVDLRVRVD AVDWIWKVHT
101: YYGFGSITAC LALNYMDRFL SLYQIPEGKA WMTQLLSVAC LSLAAKMDET SVPQSIDLQV AGDARYVFEA KTIQRMELLV LSTLKWRMQA VTPFSYLDYF
201: LHQLCGGNAP SRQAVRDATE LILCISRGTS CLEFRPSEIA ATVAAAVAGE EHAVHKAACC THVDKERVLS CHEAMIQATG ATVPPPKTAG LRSAYSPAMS
301: APRSPTGVLD LDAGYLSCTS DGASTTTITM ASSPPPASSG FDSSPVSRKR RKISR

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.