Factsheet for TraesCS5A01G200500.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G192300.1
TraesCS4B01G123100.1
TraesCS4B01G353600.1
TraesCS4D01G121200.2
TraesCS4D01G347600.1
TraesCS5A01G145500.1
TraesCS5A01G521700.1
TraesCS5B01G144100.2
TraesCS5D01G147100.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1
TraesCS7A01G248700.1
TraesCS7B01G142600.1
TraesCS7D01G247700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	TraesCS7A01G248700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7B01G142600.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7D01G247700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS4B01G353600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4D01G347600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS5A01G521700.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6A01G078200.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6B01G105100.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4A01G192300.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4B01G123100.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4D01G121200.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5A01G145500.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS5B01G144100.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5D01G147100.1	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G199100.1	Wheat	nucleus	94.75	95.94
HORVU5Hr1G059770.2	Barley	nucleus	94.75	85.99
TraesCS5D01G206200.1	Wheat	nucleus	96.3	85.01
Os09t0382300-00	Rice	nucleus	71.3	75.0
OQU89443	Sorghum	nucleus	75.93	73.87
Zm00001d020353_P001	Maize	nucleus	64.2	62.84
GSMUA_Achr3P06030_001	Banana	cytosol	48.77	53.38
GSMUA_Achr9P28180_001	Banana	nucleus	46.91	50.16
VIT_01s0026g00710.t01	Wine grape	nucleus	47.84	47.84
KRH69476	Soybean	nucleus	49.07	46.9
CDY38800	Canola	nucleus	44.44	45.14
KRG99255	Soybean	nucleus	48.15	44.83
CDY11608	Canola	nucleus	43.83	44.8
Bra007901.1-P	Field mustard	nucleus	46.6	44.54
AT1G70210.1	Thale cress	nucleus	46.6	44.54
CDY67142	Canola	nucleus	46.6	44.54
Solyc05g006050.2.1	Tomato	nucleus	45.06	43.32
PGSC0003DMT400040287	Potato	nucleus	44.75	43.15
KRH45743	Soybean	nucleus	47.84	43.06
CDY59943	Canola	nucleus	47.22	42.38
GSMUA_Achr7P19980_001	Banana	nucleus	50.31	41.9
KRH74675	Soybean	nucleus, plastid	47.22	40.05
TraesCS5A01G246800.1	Wheat	nucleus	36.42	33.43
TraesCS5A01G247000.1	Wheat	nucleus	36.11	32.96
TraesCS2A01G164800.1	Wheat	nucleus	33.95	31.88
TraesCS6A01G314900.1	Wheat	nucleus	35.19	31.84
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	26.54	27.74
TraesCS4A01G046900.1	Wheat	nucleus	29.32	27.07
TraesCS4A01G177400.1	Wheat	cytosol	26.85	26.13
TraesCS5A01G068600.1	Wheat	nucleus	27.47	25.36
TraesCS4A01G234600.1	Wheat	cytosol	25.62	24.63
TraesCS5A01G161000.1	Wheat	cytosol	26.85	24.58
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	6.79	18.33

Protein Annotations

EnsemblPlants:TraesCS5A01G200500.2	EnsemblPlantsGene:TraesCS5A01G200500	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF206	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:

Description

No Description!

Coordinates

chr5A:-:406521922..406524551

Molecular Weight (calculated)

35387.4 Da

IEP (calculated)

4.650

GRAVY (calculated)

0.118

Length

324 amino acids

Sequence
(BLAST)

001: MPEDDASFLL CAEDAFFFVD AATASTCTTA EQDDGWCSGA EESASAAAAS FVAELIGGEA DYSPRSDYSD RLRSRSVDPA ARADSVAWIL KVQEYYGFLP
101: LTAYLAVNYM DRFLSLHRLP QEDGWAMQLL AVTCLSLAAK MEETLVPSLL DLQIESTRYI FEPRTILRME LLVLTALNWR LRSVTPFTFI DFFACKVDPR
201: GRHMRYLIAR ATQMILAAIH DIEFLDHCPS SMAAAAVLCA AGETQSLTLL NPRLAVNWCI GLAEEGVSSC YQLMQQLVGG KRAATAAAAA VNLCSDGVLS
301: CDSSSCTTPP PPKRRKRSPP PVIT

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.