Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70210.1 | EER90152 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | OQU80908 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | EES04403 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | KXG40336 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | EES15619 | AT3G54180.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G199100.1 | Wheat | nucleus | 73.87 | 76.88 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 73.87 | 75.93 |
| Zm00001d020353_P001 | Maize | nucleus | 73.27 | 73.72 |
| Os09t0382300-00 | Rice | nucleus | 66.67 | 72.08 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 73.27 | 68.35 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 74.47 | 67.57 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 48.05 | 54.05 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 47.45 | 52.15 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 46.55 | 47.84 |
| AT1G70210.1 | Thale cress | nucleus | 47.45 | 46.61 |
| CDY38800 | Canola | nucleus | 44.44 | 46.4 |
| KRH69476 | Soybean | nucleus | 47.15 | 46.31 |
| CDY11608 | Canola | nucleus | 43.84 | 46.06 |
| Bra007901.1-P | Field mustard | nucleus | 45.95 | 45.13 |
| CDY67142 | Canola | nucleus | 45.95 | 45.13 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 52.25 | 44.73 |
| KRG99255 | Soybean | nucleus | 46.25 | 44.25 |
| CDY59943 | Canola | nucleus | 46.85 | 43.21 |
| PGSC0003DMT400040287 | Potato | nucleus | 43.54 | 43.15 |
| KRH45743 | Soybean | nucleus | 46.55 | 43.06 |
| Solyc05g006050.2.1 | Tomato | nucleus | 43.54 | 43.03 |
| KRH74675 | Soybean | nucleus, plastid | 45.95 | 40.05 |
| EES07560 | Sorghum | nucleus | 33.63 | 31.28 |
| EER96886 | Sorghum | nucleus | 35.14 | 30.95 |
| KXG19603 | Sorghum | nucleus | 31.53 | 30.17 |
| EES14027 | Sorghum | nucleus | 33.63 | 30.03 |
| EER97558 | Sorghum | nucleus | 30.93 | 29.86 |
| EER99528 | Sorghum | cytosol | 27.63 | 29.3 |
| OQU92473 | Sorghum | nucleus | 28.83 | 27.75 |
| EES17294 | Sorghum | nucleus | 27.33 | 25.07 |
| EER92677 | Sorghum | nucleus | 25.53 | 23.94 |
| EER91226 | Sorghum | nucleus | 26.13 | 23.51 |
| EER96424 | Sorghum | cytosol | 24.02 | 20.94 |
| OQU84124 | Sorghum | nucleus | 22.52 | 17.56 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:8056207 | UniProt:A0A1W0W522 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlants:OQU89443 | ProteinID:OQU89443 | ProteinID:OQU89443.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 | SMART:SM00385 | SMART:SM01332 | EnsemblPlantsGene:SORBI_3002G190700 |
| SUPFAM:SSF47954 | UniParc:UPI0001A83EE2 | RefSeq:XP_002462322.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:-:57730890..57734336
Molecular Weight (calculated)
35816.3 Da
IEP (calculated)
4.245
GRAVY (calculated)
0.032
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MPDDAFLFCA EDAAAAFVFD AAAAAGDVGD GDEDDDDDGC CSAVEDEESA ASIAELIGGE AQYSPRPDYP DRLRSRSIDP AARAESVAWI LKVQEYYGFL
101: PLTAYLAVNY MDRFLSLHRL PQEEDGWAMQ LLAVTCLSLA AKMEETLVPS LLDLQVEGTS RYDFDPGTVG RMELIVLTAL NWRLRSVTPF TFIDFFACKV
201: DPGGRHTRCL IARATQVILA AMHDIEFLDH CPSSMAAAAV LCATGETPSL ESVSPGAAVS WCIGLAEEGI SSCYRLMRQL VTGNVQTRVA STTMAAAVNL
301: CCSDEVLSSH SSSISTSSPP PAKRRKRSPT TAT
101: PLTAYLAVNY MDRFLSLHRL PQEEDGWAMQ LLAVTCLSLA AKMEETLVPS LLDLQVEGTS RYDFDPGTVG RMELIVLTAL NWRLRSVTPF TFIDFFACKV
201: DPGGRHTRCL IARATQVILA AMHDIEFLDH CPSSMAAAAV LCATGETPSL ESVSPGAAVS WCIGLAEEGI SSCYRLMRQL VTGNVQTRVA STTMAAAVNL
301: CCSDEVLSSH SSSISTSSPP PAKRRKRSPT TAT
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.