Factsheet for GSMUA_Achr9P28180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P03700_001
GSMUA_Achr4P02420_001
GSMUA_Achr9P12350_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	GSMUA_Achr11P...	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr3P03700_001	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr9P12350_001	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr11P...	AT3G48750.1	12857813
AT1G70210.1	GSMUA_Achr11P...	AT3G54180.1	12857813
AT1G70210.1	GSMUA_Achr4P02420_001	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06030_001	Banana	cytosol	51.82	53.04
VIT_01s0026g00710.t01	Wine grape	nucleus	51.16	47.84
OQU89443	Sorghum	nucleus	52.15	47.45
GSMUA_Achr7P19980_001	Banana	nucleus	60.73	47.3
TraesCS5A01G200500.2	Wheat	nucleus	50.16	46.91
TraesCS5B01G199100.1	Wheat	nucleus	49.17	46.56
Os09t0382300-00	Rice	nucleus	44.55	43.83
KRH69476	Soybean	nucleus	48.51	43.36
Solyc05g006050.2.1	Tomato	nucleus	47.19	42.43
CDY11608	Canola	nucleus	44.22	42.27
PGSC0003DMT400040287	Potato	nucleus	46.86	42.26
HORVU5Hr1G059770.2	Barley	nucleus	49.17	41.74
KRG99255	Soybean	nucleus	47.85	41.67
AT1G70210.1	Thale cress	nucleus	46.53	41.59
CDY38800	Canola	nucleus	43.56	41.38
CDY67142	Canola	nucleus	45.87	41.0
Bra007901.1-P	Field mustard	nucleus	45.87	41.0
TraesCS5D01G206200.1	Wheat	nucleus	49.51	40.87
KRH45743	Soybean	nucleus	47.85	40.28
Zm00001d020353_P001	Maize	nucleus	42.57	38.97
CDY59943	Canola	nucleus	45.87	38.5
KRH74675	Soybean	nucleus, plastid	48.51	38.48
Os06t0236600-00	Rice	nucleus	44.88	37.47
GSMUA_Achr6P02210_001	Banana	plastid	27.72	33.73
GSMUA_Achr1P22570_001	Banana	nucleus	40.26	32.02
GSMUA_Achr9P15070_001	Banana	nucleus	36.3	31.43
GSMUA_Achr7P26100_001	Banana	nucleus	37.95	31.34
GSMUA_Achr10P...	Banana	nucleus	33.0	31.15
GSMUA_Achr8P23430_001	Banana	nucleus	35.64	31.12
GSMUA_Achr3P06730_001	Banana	nucleus	35.31	30.84
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	35.97	30.45
GSMUA_Achr5P17920_001	Banana	nucleus	34.65	30.35
GSMUA_Achr3P21210_001	Banana	nucleus	35.31	30.31
GSMUA_Achr6P10260_001	Banana	cytosol	36.3	30.3
GSMUA_Achr7P12850_001	Banana	nucleus	35.31	29.64
GSMUA_Achr2P22330_001	Banana	nucleus	34.65	29.49
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	24.42	29.48
GSMUA_Achr5P22980_001	Banana	nucleus	33.66	29.23
GSMUA_Achr10P...	Banana	nucleus	32.67	28.78
GSMUA_Achr10P...	Banana	nucleus	33.66	28.73
GSMUA_Achr6P24270_001	Banana	nucleus	28.38	28.29
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	27.06	27.33
GSMUA_Achr10P...	Banana	nucleus	25.74	27.27
GSMUA_Achr10P...	Banana	cytosol	22.77	27.27
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	21.45	26.86
GSMUA_Achr6P07740_001	Banana	nucleus	26.73	25.47
GSMUA_Achr4P07110_001	Banana	nucleus	26.07	24.69
GSMUA_Achr6P16910_001	Banana	cytosol	22.44	24.46
GSMUA_Achr6P34040_001	Banana	nucleus	21.45	23.64
GSMUA_Achr3P13140_001	Banana	nucleus	31.68	23.59
GSMUA_AchrUn_...	Banana	cytosol	24.09	23.03
GSMUA_Achr1P09780_001	Banana	cytosol	29.37	22.94
GSMUA_Achr2P05260_001	Banana	nucleus	26.07	22.9
GSMUA_Achr4P20220_001	Banana	nucleus	26.73	22.38
GSMUA_Achr3P01010_001	Banana	nucleus	28.38	21.13
GSMUA_Achr9P12120_001	Banana	nucleus	27.72	19.91

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr9G28180_001	EnsemblPlants:GSMUA_Achr9P28180_001
EnsemblPlants:GSMUA_Achr9T28180_001	UniProt:M0U475	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00029641D8
SEG:seg	:	:	:	:	:

Description

Putative Cyclin-D1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G28180_001]

Coordinates

chr9:+:32258873..32261194

Molecular Weight (calculated)

32723.4 Da

IEP (calculated)

7.377

GRAVY (calculated)

0.055

Length

303 amino acids

Sequence
(BLAST)

001: MPPSPSPSPS DSSASSCFDL LCGEDAGELA PFGDGQPIAG FVGGEGAAAR SAGPDSLDPV ARRDAVAWIL KVRAYHRFRP LTACLAVNYV DRFLSSHRLP
101: QNGWALQLLS VACLSLAAKM EETVVPSLLD LQVEDAKFIF DPHTVLRMEL LVLAALDWRL RSVTPLSFVD FFAHKIDPCG RTARLLVLQA TQVILAAMHE
201: VDFLSHCPPA LAAAAMICAA DETQDRTFVN PATAASWCVG LTEEGIGNCC RLMRQVAVDQ RLRKSPMILS QHRVTSPVKR ESGISSSSSA PPTKRRKLNS
301: NCN

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.