Factsheet for GSMUA_Achr7P19980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P03700_001
GSMUA_Achr4P02420_001
GSMUA_Achr9P12350_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	GSMUA_Achr11P...	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr3P03700_001	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr9P12350_001	AT1G76540.1	12857813
AT1G70210.1	GSMUA_Achr11P...	AT3G48750.1	12857813
AT1G70210.1	GSMUA_Achr11P...	AT3G54180.1	12857813
AT1G70210.1	GSMUA_Achr4P02420_001	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P06030_001	Banana	cytosol	48.33	63.51
GSMUA_Achr9P28180_001	Banana	nucleus	47.3	60.73
OQU89443	Sorghum	nucleus	44.73	52.25
Os09t0382300-00	Rice	nucleus	40.36	50.97
VIT_01s0026g00710.t01	Wine grape	nucleus	42.42	50.93
TraesCS5B01G199100.1	Wheat	nucleus	41.65	50.62
TraesCS5A01G200500.2	Wheat	nucleus	41.9	50.31
KRH69476	Soybean	nucleus	40.87	46.9
CDY11608	Canola	nucleus	37.28	45.74
CDY38800	Canola	nucleus	37.28	45.45
KRG99255	Soybean	nucleus	40.36	45.11
HORVU5Hr1G059770.2	Barley	nucleus	41.13	44.82
Zm00001d020353_P001	Maize	nucleus	37.79	44.41
AT1G70210.1	Thale cress	nucleus	38.3	43.95
TraesCS5D01G206200.1	Wheat	nucleus	41.39	43.87
Solyc05g006050.2.1	Tomato	nucleus	37.79	43.62
KRH45743	Soybean	nucleus	40.36	43.61
PGSC0003DMT400040287	Potato	nucleus	37.53	43.45
Bra007901.1-P	Field mustard	nucleus	37.79	43.36
CDY67142	Canola	nucleus	37.79	43.36
CDY59943	Canola	nucleus	38.05	41.0
KRH74675	Soybean	nucleus, plastid	39.85	40.58
GSMUA_Achr6P02210_001	Banana	plastid	23.14	36.14
GSMUA_Achr8P23430_001	Banana	nucleus	31.62	35.45
GSMUA_Achr9P15070_001	Banana	nucleus	30.85	34.29
Os06t0236600-00	Rice	nucleus	31.88	34.16
GSMUA_Achr3P06730_001	Banana	nucleus	30.33	34.01
GSMUA_Achr5P17920_001	Banana	nucleus	30.08	33.81
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	30.59	33.24
GSMUA_Achr10P...	Banana	nucleus	27.25	33.02
GSMUA_Achr7P12850_001	Banana	nucleus	30.59	32.96
GSMUA_Achr7P26100_001	Banana	nucleus	30.85	32.7
GSMUA_Achr10P...	Banana	nucleus	29.82	32.68
GSMUA_Achr2P22330_001	Banana	nucleus	29.82	32.58
GSMUA_Achr10P...	Banana	nucleus	28.79	32.56
GSMUA_Achr5P22980_001	Banana	nucleus	29.05	32.38
GSMUA_Achr3P21210_001	Banana	nucleus	28.79	31.73
GSMUA_Achr6P10260_001	Banana	cytosol	29.31	31.41
GSMUA_Achr1P22570_001	Banana	nucleus	30.59	31.23
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	19.79	30.68
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	22.36	29.0
GSMUA_Achr6P24270_001	Banana	nucleus	22.62	28.95
GSMUA_Achr10P...	Banana	cytosol	18.51	28.46
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	17.48	28.1
GSMUA_Achr6P34040_001	Banana	nucleus	18.51	26.18
GSMUA_Achr10P...	Banana	nucleus	19.02	25.87
GSMUA_Achr6P16910_001	Banana	cytosol	18.25	25.54
GSMUA_AchrUn_...	Banana	cytosol	19.28	23.66
GSMUA_Achr6P07740_001	Banana	nucleus	19.28	23.58
GSMUA_Achr4P07110_001	Banana	nucleus	19.28	23.44
GSMUA_Achr3P13140_001	Banana	nucleus	24.16	23.1
GSMUA_Achr1P09780_001	Banana	cytosol	22.88	22.94
GSMUA_Achr4P20220_001	Banana	nucleus	20.57	22.1
GSMUA_Achr2P05260_001	Banana	nucleus	19.54	22.03
GSMUA_Achr3P01010_001	Banana	nucleus	22.62	21.62
GSMUA_Achr9P12120_001	Banana	nucleus	22.11	20.38

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr7G19980_001	EnsemblPlants:GSMUA_Achr7P19980_001
EnsemblPlants:GSMUA_Achr7T19980_001	UniProt:M0TJ35	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000296813B
SEG:seg	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G19980_001]

Coordinates

chr7:+:22961539..22964212

Molecular Weight (calculated)

42429.9 Da

IEP (calculated)

4.607

GRAVY (calculated)

0.198

Length

389 amino acids

Sequence
(BLAST)

001: MPLTLSDHGS CWDLLCGEDV SELADDSPGG VGEPAEFPDD SDESIAGFIE GEADSSPQLD YPDRFQAKLL DPAARQEAVT WILKVHEYYC FRPLTACLAV
101: NYLDRFLSRH CLPQNEWTLQ LLSVACLSLA AKMEETLLPS LLDLQVEGAK IIFEPRTVLR MELVVLNALN WRLRSVTPFT FIDFFVHKID PVGKYARTLV
201: SLATEITLAT TKDVRFLSHC PSSLAAAAII CATDEIKDLA FVDPGIAASW CIGLTEAGIA GCYRSMKQVI VNRTRKASTS VDLEPSVSSS YSSPPSKRRK
301: LNNNCLWLSN LHSPNGSLVG QSILLLSLTS IYCISSLSLS LSLSLSLSLY IFIYIGETLC GCEVDACQPG EDVCSSSFRL CCAACGHGC

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.