Factsheet for TraesCS5D01G206200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G192300.1
TraesCS4B01G123100.1
TraesCS4B01G353600.1
TraesCS4D01G121200.2
TraesCS4D01G347600.1
TraesCS5A01G145500.1
TraesCS5A01G521700.1
TraesCS5B01G144100.2
TraesCS5D01G147100.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1
TraesCS7A01G248700.1
TraesCS7B01G142600.1
TraesCS7D01G247700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	TraesCS7A01G248700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7B01G142600.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7D01G247700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS4B01G353600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4D01G347600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS5A01G521700.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6A01G078200.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6B01G105100.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4A01G192300.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4B01G123100.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4D01G121200.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5A01G145500.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS5B01G144100.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5D01G147100.1	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G200500.2	Wheat	nucleus	85.01	96.3
TraesCS5B01G199100.1	Wheat	nucleus	82.83	95.0
HORVU5Hr1G059770.2	Barley	nucleus	83.11	85.43
OQU89443	Sorghum	nucleus	67.57	74.47
Os09t0382300-00	Rice	nucleus	62.4	74.35
Zm00001d020353_P001	Maize	nucleus	56.13	62.24
GSMUA_Achr3P06030_001	Banana	cytosol	41.96	52.03
GSMUA_Achr9P28180_001	Banana	nucleus	40.87	49.51
VIT_01s0026g00710.t01	Wine grape	nucleus	42.23	47.84
KRH69476	Soybean	nucleus	43.32	46.9
CDY38800	Canola	nucleus	39.78	45.77
KRG99255	Soybean	nucleus	43.05	45.4
Bra007901.1-P	Field mustard	nucleus	41.69	45.13
CDY67142	Canola	nucleus	41.69	45.13
CDY11608	Canola	nucleus	38.96	45.11
AT1G70210.1	Thale cress	nucleus	41.42	44.84
KRH45743	Soybean	nucleus	42.78	43.61
Solyc05g006050.2.1	Tomato	nucleus	39.78	43.32
PGSC0003DMT400040287	Potato	nucleus	39.51	43.15
CDY59943	Canola	nucleus	42.23	42.94
GSMUA_Achr7P19980_001	Banana	nucleus	43.87	41.39
KRH74675	Soybean	nucleus, plastid	41.96	40.31
TraesCS5D01G253200.1	Wheat	nucleus	31.61	32.58
TraesCS2D01G171700.1	Wheat	nucleus	29.97	32.16
TraesCS5D01G253500.1	Wheat	nucleus	31.61	32.04
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	23.16	27.16
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	23.98	25.58
TraesCS6D01G294200.1	Wheat	nucleus	17.17	25.0
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	22.89	24.93
TraesCS5D01G080600.1	Wheat	nucleus	23.71	24.72
TraesCS5D01G165900.1	Wheat	cytosol	23.71	24.58
TraesCS4D01G079400.1	Wheat	cytosol	22.07	24.04

Protein Annotations

EnsemblPlants:TraesCS5D01G206200.1	EnsemblPlantsGene:TraesCS5D01G206200	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF206	PFAM:PF00134	PFAM:PF02984	SEG:seg	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:	:

Description

No Description!

Coordinates

chr5D:-:312436576..312440163

Molecular Weight (calculated)

40115.1 Da

IEP (calculated)

5.435

GRAVY (calculated)

0.058

Length

367 amino acids

Sequence
(BLAST)

001: MPEDDASFLL CAEDAFFFVD AATASTCTTA EQIGGWCSGA EEESAAASFV AELIGGEADY SPRSDYSDRL RSRSVDPAAR ADSVAWTLKV QEYYGFLPLT
101: AYLAVNYMDR FLSLHRLPVS SPPGARRPRP ATSPTLNTHI SPCQTTMSRA YQITSLCSVS FAMQEDGWAM QLLAVTCLSL AAKMEETLVP SLLDLQIEST
201: RYIFEPRTIL RMELLVLTAL NWRLRSVTPF TFIDFFACKV DPRGRHMRYL IARATQIILA AIHDIEFLDH CPSSMAAAAV LCAAGETPSL TLLNPRLAVN
301: WCIGLAEEGV SSCYQLMQQL VGGKRAKTTA AAAVNLCSDE VLSCDSSSCT TPPPPKRRKR SPPPVIT

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.