Factsheet for TraesCS5B01G199100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G192300.1
TraesCS4B01G123100.1
TraesCS4B01G353600.1
TraesCS4D01G121200.2
TraesCS4D01G347600.1
TraesCS5A01G145500.1
TraesCS5A01G521700.1
TraesCS5B01G144100.2
TraesCS5D01G147100.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1
TraesCS7A01G248700.1
TraesCS7B01G142600.1
TraesCS7D01G247700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	TraesCS7A01G248700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7B01G142600.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS7D01G247700.1	AT1G76540.1	12857813
AT1G70210.1	TraesCS4B01G353600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4D01G347600.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS5A01G521700.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6A01G078200.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS6B01G105100.1	AT3G48750.1	12857813
AT1G70210.1	TraesCS4A01G192300.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4B01G123100.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS4D01G121200.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5A01G145500.1	AT3G54180.1	12857813
AT1G70210.1	TraesCS5B01G144100.2	AT3G54180.1	12857813
AT1G70210.1	TraesCS5D01G147100.1	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G200500.2	Wheat	nucleus	95.94	94.75
HORVU5Hr1G059770.2	Barley	nucleus	94.38	84.59
TraesCS5D01G206200.1	Wheat	nucleus	95.0	82.83
Os09t0382300-00	Rice	nucleus	71.25	74.03
OQU89443	Sorghum	nucleus	76.88	73.87
Zm00001d020353_P001	Maize	nucleus	64.06	61.93
GSMUA_Achr3P06030_001	Banana	cytosol	49.06	53.04
GSMUA_Achr9P28180_001	Banana	nucleus	46.56	49.17
VIT_01s0026g00710.t01	Wine grape	nucleus	47.81	47.22
KRH69476	Soybean	nucleus	48.75	46.02
KRG99255	Soybean	nucleus	48.44	44.54
CDY38800	Canola	nucleus	44.38	44.51
Bra007901.1-P	Field mustard	nucleus	46.88	44.25
CDY67142	Canola	nucleus	46.88	44.25
CDY11608	Canola	nucleus	43.75	44.16
AT1G70210.1	Thale cress	nucleus	46.56	43.95
Solyc05g006050.2.1	Tomato	nucleus	45.62	43.32
PGSC0003DMT400040287	Potato	nucleus	45.31	43.15
KRH45743	Soybean	nucleus	48.12	42.78
CDY59943	Canola	nucleus	47.5	42.11
GSMUA_Achr7P19980_001	Banana	nucleus	50.62	41.65
KRH74675	Soybean	nucleus, plastid	47.19	39.53
TraesCS5B01G243900.1	Wheat	nucleus	36.88	33.24
TraesCS6B01G345300.1	Wheat	plastid	35.62	32.29
TraesCS2B01G190700.1	Wheat	nucleus	34.69	32.27
TraesCS5B01G244100.1	Wheat	nucleus	35.94	31.94
TraesCS4B01G257900.1	Wheat	cytosol	26.88	26.06
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	26.88	25.9
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	26.88	25.22
TraesCS5B01G158400.1	Wheat	cytosol	27.19	24.58
TraesCS5B01G075000.1	Wheat	nucleus	26.88	24.43
TraesCS4B01G080500.1	Wheat	nucleus	25.31	24.11

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS5B01G199100	EnsemblPlants:TraesCS5B01G199100.1	TIGR:cd00043	SEG:seg	:

Description

No Description!

Coordinates

chr5B:-:358815796..358818538

Molecular Weight (calculated)

35377.3 Da

IEP (calculated)

4.611

GRAVY (calculated)

0.080

Length

320 amino acids

Sequence
(BLAST)

001: MPQDDASFLL CAEDAFFFVD AAASTCTTAE QDDGWCSSAE EESAASFVAE LIGGEADYSP RSDYSDRLRS RSVDPAARAD SVAWIVKVQE YYGFLPLTAY
101: LAVNYMDRFL SLHRLPQEDG WAMQLLAVTC LSLAAKMEET LVPSLLDLQI ESTRYIFEPR TILRMELLVL TALNWRLRSV TPFTFIDFFA CKVDPRGRHM
201: RYLIARATQM ILAAIHDIEF LDHCPSSMAA AAVLCAAGET PSLTSLLNPR LAVNWCIGLA EEGVSSCYQL IQRLVGCKRA ATAEAAVNLC SDEVLSCDYS
301: SCTTPPPPKR RKRSPPPVIT

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.