CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06014
KRH11866
KRH17547
KRH36887
KRH37522
KRH42252
KRH47306
KRH48128
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	KRH06014	AT1G76540.1	12857813
AT1G70210.1	KRH17547	AT1G76540.1	12857813
AT1G70210.1	KRH37522	AT1G76540.1	12857813
AT1G70210.1	KRH48128	AT1G76540.1	12857813
AT1G70210.1	KRH11866	AT3G48750.1	12857813
AT1G70210.1	KRH36887	AT3G48750.1	12857813
AT1G70210.1	KRH42252	AT3G48750.1	12857813
AT1G70210.1	KRH58370	AT3G48750.1	12857813
AT1G70210.1	KRH47306	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99255	Soybean	nucleus	91.94	95.11
KRH69476	Soybean	nucleus	75.83	80.53
VIT_01s0026g00710.t01	Wine grape	nucleus	66.94	74.38
KRH74675	Soybean	nucleus, plastid	75.83	71.47
PGSC0003DMT400040287	Potato	nucleus	60.28	64.58
Solyc05g006050.2.1	Tomato	nucleus	60.28	64.39
AT1G70210.1	Thale cress	nucleus	57.78	61.36
CDY11608	Canola	nucleus	53.61	60.88
CDY38800	Canola	nucleus	53.61	60.5
Bra007901.1-P	Field mustard	nucleus	55.0	58.41
CDY67142	Canola	nucleus	55.0	58.41
CDY59943	Canola	nucleus	56.39	56.23
GSMUA_Achr3P06030_001	Banana	cytosol	41.67	50.68
TraesCS5B01G199100.1	Wheat	nucleus	42.78	48.12
GSMUA_Achr9P28180_001	Banana	nucleus	40.28	47.85
TraesCS5A01G200500.2	Wheat	nucleus	43.06	47.84
Os09t0382300-00	Rice	nucleus	40.83	47.73
OQU89443	Sorghum	nucleus	43.06	46.55
HORVU5Hr1G059770.2	Barley	nucleus	43.06	43.42
TraesCS5D01G206200.1	Wheat	nucleus	43.61	42.78
Zm00001d020353_P001	Maize	nucleus	37.22	40.48
GSMUA_Achr7P19980_001	Banana	nucleus	43.61	40.36
Os06t0236600-00	Rice	nucleus	40.0	39.67
KRH35652	Soybean	nucleus	32.78	39.07
KRG91131	Soybean	nucleus	34.44	38.27
KRH58137	Soybean	nucleus	32.78	37.11
KRH04404	Soybean	vacuole	33.61	35.59
KRH52917	Soybean	nucleus	33.33	34.09
KRH05626	Soybean	cytosol	20.28	33.95
KRH69654	Soybean	cytosol	22.78	33.74
KRH62196	Soybean	nucleus	32.78	33.52
KRH16827	Soybean	nucleus	32.78	33.24
KRH72435	Soybean	nucleus	32.22	32.49
KRH21593	Soybean	nucleus	23.61	31.25
KRH10729	Soybean	nucleus	23.33	30.88
KRH74510	Soybean	nucleus	30.56	30.47
KRH61407	Soybean	nucleus	26.39	30.45
KRH45568	Soybean	nucleus	29.17	30.35
KRH28363	Soybean	nucleus	27.5	29.91
KRG99448	Soybean	nucleus	29.72	29.89
KRH77118	Soybean	nucleus	27.5	29.82
KRH61348	Soybean	nucleus	28.89	29.8
KRH52092	Soybean	nucleus	25.83	29.62
KRH15412	Soybean	cytosol	21.94	29.26
KRH28424	Soybean	nucleus	27.22	29.25
KRH04529	Soybean	nucleus	30.0	29.11
KRH22479	Soybean	cytosol	25.28	28.8
KRH57973	Soybean	nucleus	30.28	28.46
KRH26876	Soybean	nucleus	24.72	28.25
KRH52038	Soybean	nucleus	28.06	27.9
KRH77050	Soybean	nucleus, plastid	25.83	27.84
KRG90996	Soybean	nucleus	29.44	26.97
KRH25470	Soybean	nucleus	23.89	26.54
KRH56054	Soybean	cytosol, nucleus, plasma membrane	24.17	26.44
KRH35760	Soybean	nucleus	29.17	26.12
KRH65892	Soybean	cytosol	20.0	25.0
KRH75669	Soybean	cytosol	20.0	24.91
KRH54628	Soybean	cytosol	10.0	23.53
KRH54622	Soybean	cytosol	10.0	23.53

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100778578	MapMan:13.1.1.1.4	EMBL:ACUP02005284	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_08G291000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:I1KXK2	EnsemblPlants:KRH45743	ProteinID:KRH45743	ProteinID:KRH45743.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002338707	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:-:40477873..40482536

Molecular Weight (calculated)

40073.9 Da

IEP (calculated)

5.274

GRAVY (calculated)

-0.104

Length

360 amino acids

Sequence
(BLAST)

001: MNAEPPLPPA LLMSVSCLSD YDLLCGEDTS GVLSGESPEC SSSDIGSSPL PPSPPPSPTM TEDCYSIASF IEHERNFVPG FEYLSRFQSR SLDANAREES
101: VAWILKVHAY YGFQPLTAYL AVNYMDRFLD SSQLPETNGW PLQLLSVACL SLAAKMEEPL VPSLLDLQIE GAKYIFEPRT IRRMELLVLG VLDWRLRSVT
201: PLCFLVFFAC KADSTGTFTR FLISRATEII VSNIQEASFL AYRPSCIAAA AILTAANEIP NWSVVKPEQA ESWCQGIRKE KVIGCYQLMQ ELVINNNQRK
301: LPTKVLPQLR VTTRTRMRSS TVSSFSSTSS SSSSTSFSLS CKRRKLNNRL WVDDEKGNSE

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.