CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH11866
KRH13310
KRH20664
KRH25124
KRH30550
KRH36887
KRH42252
KRH47306
KRH58370
KRH63701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	KRH25124	AT2G27960.1	20706207
AT4G03270.1	KRH30550	AT2G27960.1	20706207
AT4G03270.1	KRG92238	AT2G32710.1	20706207
AT4G03270.1	KRH13310	AT3G12280.1	22921914
AT4G03270.1	KRH20664	AT3G12280.1	22921914
AT4G03270.1	KRH63701	AT3G12280.1	22921914
AT4G03270.1	KRH11866	AT3G48750.1	20706207
AT4G03270.1	KRH36887	AT3G48750.1	20706207
AT4G03270.1	KRH42252	AT3G48750.1	20706207
AT4G03270.1	KRH58370	AT3G48750.1	20706207
AT4G03270.1	KRH47306	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26876	Soybean	nucleus	97.15	97.46
KRH25470	Soybean	nucleus	68.04	66.36
KRH56054	Soybean	cytosol, nucleus, plasma membrane	68.67	65.96
VIT_12s0134g00500.t01	Wine grape	nucleus	53.48	57.48
PGSC0003DMT400039033	Potato	nucleus	50.63	51.45
Solyc07g054950.1.1	Tomato	nucleus	49.05	50.0
KRH21593	Soybean	nucleus	39.87	46.32
KRH10729	Soybean	nucleus	39.87	46.32
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	36.71	46.22
AT4G03270.1	Thale cress	nucleus	43.35	45.36
Bra034198.1-P	Field mustard	nucleus	41.77	44.3
CDY22116	Canola	nucleus	41.77	44.3
GSMUA_Achr6P24270_001	Banana	nucleus	42.09	43.75
CDY21951	Canola	nucleus	41.46	43.38
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	38.29	40.33
CDX90892	Canola	nucleus	19.3	40.13
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	30.7	40.08
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	29.75	37.45
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	34.81	35.48
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	35.13	35.46
EER99528	Sorghum	cytosol	33.54	33.76
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	32.59	33.55
Os07t0556000-01	Rice	cytosol	33.86	33.44
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	35.44	32.84
GSMUA_Achr9P12120_001	Banana	nucleus	42.09	31.52
KRH72435	Soybean	nucleus	32.59	28.85
KRH16827	Soybean	nucleus	31.96	28.45
KRH52917	Soybean	nucleus	30.06	26.99
KRH69476	Soybean	nucleus	28.8	26.84
HORVU7Hr1G117300.3	Barley	cytosol	13.92	26.67
KRH28424	Soybean	nucleus	27.85	26.27
KRH62196	Soybean	nucleus	29.11	26.14
KRH35652	Soybean	nucleus	24.68	25.83
KRH69654	Soybean	cytosol	19.62	25.51
KRG99255	Soybean	nucleus	27.85	25.29
KRH45743	Soybean	nucleus	28.8	25.28
KRH77050	Soybean	nucleus, plastid	26.58	25.15
KRG91131	Soybean	nucleus	25.63	25.0
KRH45568	Soybean	nucleus	26.9	24.57
KRH74510	Soybean	nucleus	27.85	24.38
KRG99448	Soybean	nucleus	26.9	23.74
KRH52092	Soybean	nucleus	23.1	23.25
KRH61407	Soybean	nucleus	22.78	23.08
KRH74675	Soybean	nucleus, plastid	27.85	23.04
KRH04529	Soybean	nucleus	26.9	22.91
KRH05626	Soybean	cytosol	15.51	22.79
KRH75669	Soybean	cytosol	20.57	22.49
KRH58137	Soybean	nucleus	22.47	22.33
KRH57973	Soybean	nucleus	26.9	22.19
KRH28363	Soybean	nucleus	23.1	22.05
KRH77118	Soybean	nucleus	22.78	21.69
KRH65892	Soybean	cytosol	19.3	21.18
KRH04404	Soybean	vacuole	22.78	21.18
KRG90996	Soybean	nucleus	25.32	20.36
KRH15412	Soybean	cytosol	16.77	19.63
KRH54622	Soybean	cytosol	9.49	19.61
KRH54628	Soybean	cytosol	9.49	19.61
KRH61348	Soybean	nucleus	21.52	19.48
KRH35760	Soybean	nucleus	24.37	19.15
KRH52038	Soybean	nucleus	21.84	19.06

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EMBL:ACUP02008412	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_D_plant	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_13G303000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	UniProt:I1M3Y8
EnsemblPlants:KRH22479	ProteinID:KRH22479	ProteinID:KRH22479.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000233BDBD

Description

hypothetical protein

Coordinates

chr13:+:39995885..39998589

Molecular Weight (calculated)

36006.1 Da

IEP (calculated)

5.635

GRAVY (calculated)

-0.122

Length

316 amino acids

Sequence
(BLAST)

001: MDFDLENPLG NFHDLPCDAV PSLFLIESDH IPPPNYCQSL KASDFDISVR RDVVSLISQL SCTFDPVLPY LAINYLDRFL ANQGILQPKP WANKLLAVSC
101: FSLAAKMLKT EYSATDVQVL MNHGDGGAIF ETQTIQRMEG IVLGALQWRM RSITPFSFIP FFVNLFRLKD PALRQVLKDR ASEIILKSQR EIKVLEFKPS
201: TVAASALLYA SHELFPFQYP CFLRAISDCS YINKETVVQC YNVIQDIARE EYESVLNINS TSDTPVNVLD EHFLSLESEK TNGTNVVVTQ EQDFKRRKTT
301: DYGNNRRVPF SHFHQC

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.