Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 92.03 | 74.52 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 92.83 | 74.44 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 94.02 | 69.21 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 75.7 | 61.89 |
| EER99528 | Sorghum | cytosol | 76.49 | 61.15 |
| Os07t0556000-01 | Rice | cytosol | 76.49 | 60.0 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 49.0 | 40.46 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 25.1 | 38.18 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 45.02 | 37.67 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 35.46 | 35.46 |
| CDX90892 | Canola | nucleus | 19.52 | 32.24 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 37.05 | 31.63 |
| Bra034198.1-P | Field mustard | nucleus | 37.45 | 31.54 |
| CDY22116 | Canola | nucleus | 37.45 | 31.54 |
| Solyc02g079370.2.1 | Tomato | nucleus | 36.65 | 30.98 |
| VIT_00s0203g00160.t01 | Wine grape | cytosol | 38.65 | 30.7 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 36.65 | 30.67 |
| KRH10729 | Soybean | nucleus | 33.07 | 30.51 |
| KRH26876 | Soybean | nucleus | 37.85 | 30.16 |
| CDY21951 | Canola | nucleus | 36.26 | 30.13 |
| KRH22479 | Soybean | cytosol | 37.45 | 29.75 |
| KRH21593 | Soybean | nucleus | 31.87 | 29.41 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 49.0 | 29.15 |
| PGSC0003DMT400039033 | Potato | nucleus | 34.66 | 27.97 |
| AT4G03270.1 | Thale cress | nucleus | 33.47 | 27.81 |
| HORVU0Hr1G013250.1 | Barley | cytosol | 23.11 | 27.1 |
| PGSC0003DMT400012934 | Potato | nucleus | 32.67 | 27.06 |
| Solyc03g006670.2.1 | Tomato | nucleus | 32.67 | 26.37 |
| Solyc07g054950.1.1 | Tomato | nucleus | 32.27 | 26.13 |
| KRH25470 | Soybean | nucleus | 33.07 | 25.62 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 33.07 | 25.23 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 29.08 | 20.8 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 28.69 | 20.17 |
| HORVU7Hr1G033350.3 | Barley | cytosol | 21.91 | 18.27 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 23.11 | 16.52 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 22.31 | 16.05 |
| HORVU4Hr1G013700.2 | Barley | plastid | 23.11 | 14.68 |
| HORVU2Hr1G030130.1 | Barley | plastid | 25.5 | 13.97 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | UniProt:A0A287DVA5 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_D_plant | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | EnsemblPlantsGene:HORVU0Hr1G003280 | EnsemblPlants:HORVU0Hr1G003280.5 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF240 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000B484B14 | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchrUn:-:13486646..13488396
Molecular Weight (calculated)
27200.9 Da
IEP (calculated)
8.375
GRAVY (calculated)
0.069
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: RLAQVRYDGE LGLHPRVAYL AQNYVDRFLS KGQLPFERKP WAPRLLAISC LSIAAKMQRV DAISMDYIQR DEEFMFDAVT IRRMERVVLG ALEWRARSVT
101: PLAFLGFFLS ACFPPPRHPA LLDAVKERAV DLLLRAQPEV KMAEFSPSVV AASALLAAAG EIAVAHLPAF QAGVAACSFV NSEKLRECGE VMAAVCGVGP
201: GWTAASADTP VTVLGHGHYR SASSESERTV GSVANGTDAK KRCMGPPSQW G
101: PLAFLGFFLS ACFPPPRHPA LLDAVKERAV DLLLRAQPEV KMAEFSPSVV AASALLAAAG EIAVAHLPAF QAGVAACSFV NSEKLRECGE VMAAVCGVGP
201: GWTAASADTP VTVLGHGHYR SASSESERTV GSVANGTDAK KRCMGPPSQW G
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.