Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G308900.1 | Wheat | nucleus | 66.42 | 98.89 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 66.42 | 98.89 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 66.42 | 98.89 |
| Os03t0146300-01 | Rice | nucleus | 61.19 | 91.11 |
| AT2G27960.1 | Thale cress | cytosol | 57.46 | 88.51 |
| Zm00001d048394_P001 | Maize | nucleus | 56.72 | 87.36 |
| KXG40187 | Sorghum | nucleus | 55.97 | 86.21 |
| AT2G27970.1 | Thale cress | nucleus | 52.99 | 85.54 |
| KRH25124 | Soybean | cytosol | 55.97 | 85.23 |
| KRH30550 | Soybean | cytosol | 55.97 | 85.23 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 58.96 | 84.95 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 55.22 | 84.09 |
| PGSC0003DMT400001218 | Potato | cytosol | 54.48 | 82.95 |
| PGSC0003DMT400048460 | Potato | cytosol | 53.73 | 81.82 |
| CDY30517 | Canola | cytosol | 47.76 | 79.01 |
| CDX77145 | Canola | cytosol | 47.76 | 79.01 |
| Bra034380.1-P | Field mustard | cytosol | 47.76 | 79.01 |
| Zm00001d027655_P001 | Maize | cytosol | 53.73 | 69.23 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 61.19 | 61.65 |
| Zm00001d015611_P002 | Maize | plastid | 52.24 | 39.11 |
Protein Annotations
| MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | UniProt:A0A287PTZ2 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | GO:GO:0003674 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016538 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0045859 | GO:GO:0051301 | EnsemblPlantsGene:HORVU4Hr1G079310 | EnsemblPlants:HORVU4Hr1G079310.1 |
| InterPro:IPR036858 | PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 |
| SMART:SM01084 | SUPFAM:SSF55637 | UniParc:UPI000B472E43 | SEG:seg | : | : |
Description
Cyclin-dependent kinases regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A287PTZ2]
Coordinates
chrchr4H:+:611811711..611814381
Molecular Weight (calculated)
15312.5 Da
IEP (calculated)
10.063
GRAVY (calculated)
-0.410
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: LLPPSAAPLL SLVSSRVCRR SVRTSSQPPH LRSETLDRQA AVVDMGQIQY SEKYFDDTFE YRHVVLPPEV AKLLPKNRLL AENEWRALGV QQSRGWVHYA
101: VHRPEPHIML FRRPLNYQQQ QDAAAAAAAL MMPK
101: VHRPEPHIML FRRPLNYQQQ QDAAAAAAAL MMPK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.