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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra034380.1-P Field mustard cytosol 81.93 83.95
CDX77145 Canola cytosol 81.93 83.95
CDY30517 Canola cytosol 81.93 83.95
AT2G27960.1 Thale cress cytosol 86.75 82.76
KRH30550 Soybean cytosol 86.75 81.82
KRH25124 Soybean cytosol 86.75 81.82
Zm00001d048394_P001 Maize nucleus 85.54 81.61
PGSC0003DMT400001218 Potato cytosol 85.54 80.68
VIT_06s0061g00810.t01 Wine grape cytosol 85.54 80.68
KXG40187 Sorghum nucleus 84.34 80.46
Os03t0146300-01 Rice nucleus 86.75 80.0
GSMUA_Achr2P11710_001 Banana nucleus 89.16 79.57
PGSC0003DMT400048460 Potato cytosol 84.34 79.55
TraesCS4A01G410900.1 Wheat nucleus 85.54 78.89
TraesCS4B01G311000.1 Wheat nucleus 85.54 78.89
TraesCS4D01G308900.1 Wheat nucleus 85.54 78.89
Zm00001d027655_P001 Maize cytosol 77.11 61.54
GSMUA_Achr2P11750_001 Banana cytosol 89.16 55.64
HORVU4Hr1G079310.1 Barley cytosol, mitochondrion, nucleus, plastid 85.54 52.99
Zm00001d015611_P002 Maize plastid 72.29 33.52
Protein Annotations
MapMan:13.1.1.2.8Gene3D:3.30.170.10EntrezGene:817341UniProt:A0A178W1T0ProteinID:AAD21505.1ProteinID:AEC08065.1
ArrayExpress:AT2G27970EnsemblPlantsGene:AT2G27970RefSeq:AT2G27970TAIR:AT2G27970RefSeq:AT2G27970-TAIR-GEnsemblPlants:AT2G27970.1
TAIR:AT2G27970.1EMBL:BT010784EMBL:BT011257Symbol:CKS2InterPro:Cyclin-dep_kinase_reg-subInterPro:Cyclin-dep_kinase_reg-sub_sf
GO:GO:0000307GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139GO:GO:0006464GO:GO:0007049
GO:GO:0007346GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016538
GO:GO:0019005GO:GO:0019538GO:GO:0019901GO:GO:0030234GO:GO:0042393GO:GO:0043130
GO:GO:0045737GO:GO:0045859GO:GO:0045893GO:GO:0051301GO:GO:0061575InterPro:IPR036858
RefSeq:NP_180364.1ProteinID:OAP11293.1PFAM:PF01111PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078
PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029
PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052
PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195
PO:PO:0025281PRINTS:PR00296ScanProsite:PS00944PANTHER:PTHR23415PANTHER:PTHR23415:SF29UniProt:Q9SJJ5
SMART:SM01084SUPFAM:SSF55637UniParc:UPI00000A91F3:::
Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
Coordinates
chr2:-:11912151..11913425
Molecular Weight (calculated)
9988.0 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.730
Length
83 amino acids
Sequence
(BLAST)
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.