Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d048394_P001 | Maize | nucleus | 72.12 | 86.21 |
| KXG40187 | Sorghum | nucleus | 71.15 | 85.06 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 68.27 | 80.68 |
| AT2G27960.1 | Thale cress | cytosol | 67.31 | 80.46 |
| Os03t0146300-01 | Rice | nucleus | 69.23 | 80.0 |
| PGSC0003DMT400001218 | Potato | cytosol | 67.31 | 79.55 |
| PGSC0003DMT400048460 | Potato | cytosol | 66.35 | 78.41 |
| CDX76267 | Canola | cytosol | 65.38 | 77.27 |
| Bra034614.1-P | Field mustard | cytosol | 65.38 | 77.27 |
| AT2G27970.1 | Thale cress | nucleus | 61.54 | 77.11 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 66.35 | 76.67 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 66.35 | 76.67 |
| TraesCS4D01G308900.1 | Wheat | nucleus | 66.35 | 76.67 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 68.27 | 76.34 |
| CDY57739 | Canola | cytosol | 65.38 | 75.56 |
| KRH25143 | Soybean | cytosol | 59.62 | 72.94 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 69.23 | 54.14 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 69.23 | 53.73 |
| Zm00001d015611_P002 | Maize | plastid | 63.46 | 36.87 |
Protein Annotations
| EntrezGene:100282062 | MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | UniProt:B6SLG7 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf |
| EMBL:EU953582 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016538 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0045859 | GO:GO:0051301 | InterPro:IPR036858 | ProteinID:ONL93613.1 |
| PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | SMART:SM01084 |
| SUPFAM:SSF55637 | UniParc:UPI000182B065 | EnsemblPlantsGene:Zm00001d027655 | EnsemblPlants:Zm00001d027655_P001 | EnsemblPlants:Zm00001d027655_T001 | SEG:seg |
Description
Cyclin-dependent kinases regulatory subunit
Coordinates
chr1:+:10257667..10258752
Molecular Weight (calculated)
12454.0 Da
IEP (calculated)
7.873
GRAVY (calculated)
-0.614
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGDTIRKVD REVLVDMEQI QYSEKYYDDT YEYRHVVLPP EVAKLLPRNI LLSEKQWRLV GVQQSRGWVH YAIHRPEPHI MLFRRPINYQ QQQEEAAAAH
101: VLPK
101: VLPK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.