Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400011487 | nucleus |
| PGSC0003DMT400016793 | |
| PGSC0003DMT400017831 | |
| PGSC0003DMT400019919 | nucleus, nucleus, nucleus, nucleus |
| PGSC0003DMT400020997 | |
| PGSC0003DMT400021687 | |
| PGSC0003DMT400022949 | |
| PGSC0003DMT400022952 | |
| PGSC0003DMT400025910 | |
| PGSC0003DMT400031329 | nucleus |
| PGSC0003DMT400037827 | nucleus, nucleus |
| PGSC0003DMT400039033 | nucleus, nucleus |
| PGSC0003DMT400040785 | nucleus, nucleus |
| PGSC0003DMT400041637 | nucleus, nucleus |
| PGSC0003DMT400045507 | nucleus |
| PGSC0003DMT400046261 | |
| PGSC0003DMT400064307 | nucleus |
| PGSC0003DMT400066394 | nucleus, nucleus |
| PGSC0003DMT400068627 | nucleus |
| PGSC0003DMT400068629 | nucleus |
| PGSC0003DMT400068827 | |
| PGSC0003DMT400068829 | |
| PGSC0003DMT400071215 | |
| PGSC0003DMT400074131 | |
| PGSC0003DMT400076291 | nucleus, nucleus, nucleus, nucleus |
| PGSC0003DMT400076326 | endoplasmic reticulum, endoplasmic reticulum |
| PGSC0003DMT400077428 | |
| PGSC0003DMT400079932 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400048460 | Potato | cytosol | 97.73 | 97.73 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 95.45 | 95.45 |
| KRH30550 | Soybean | cytosol | 94.32 | 94.32 |
| KRH25124 | Soybean | cytosol | 94.32 | 94.32 |
| AT2G27960.1 | Thale cress | cytosol | 90.91 | 91.95 |
| KXG40187 | Sorghum | nucleus | 87.5 | 88.51 |
| Zm00001d048394_P001 | Maize | nucleus | 87.5 | 88.51 |
| AT2G27970.1 | Thale cress | nucleus | 80.68 | 85.54 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 89.77 | 84.95 |
| Os03t0146300-01 | Rice | nucleus | 86.36 | 84.44 |
| CDY30517 | Canola | cytosol | 73.86 | 80.25 |
| CDX77145 | Canola | cytosol | 73.86 | 80.25 |
| Bra034380.1-P | Field mustard | cytosol | 73.86 | 80.25 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 81.82 | 80.0 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 81.82 | 80.0 |
| TraesCS4D01G308900.1 | Wheat | nucleus | 81.82 | 80.0 |
| Zm00001d027655_P001 | Maize | cytosol | 79.55 | 67.31 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 89.77 | 59.4 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 82.95 | 54.48 |
| Zm00001d015611_P002 | Maize | plastid | 72.73 | 35.75 |
Protein Annotations
| EntrezGene:102580187 | MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | GO:GO:0003674 |
| GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016538 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0045859 | GO:GO:0051301 | InterPro:IPR036858 | UniProt:M0ZI38 |
| PFAM:PF01111 | EnsemblPlantsGene:PGSC0003DMG402000458 | PGSC:PGSC0003DMG402000458 | EnsemblPlants:PGSC0003DMT400001218 | PRINTS:PR00296 | ScanProsite:PS00944 |
| PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | SMART:SM01084 | SUPFAM:SSF55637 | UniParc:UPI00029583FC | RefSeq:XP_006349044.1 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-dependent kinases regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402000458]
Coordinates
chr11:-:39268375..39270856
Molecular Weight (calculated)
10634.7 Da
IEP (calculated)
9.394
GRAVY (calculated)
-0.842
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MGQIQYSEKY FDDTYEYRHV VLPPDVAKLL PKNRLLSENE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQQQENQ TQQVLLAK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.