Factsheet for PGSC0003DMT400040785

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
endoplasmic reticulum 1
plasma membrane 1
vacuole 1
golgi 1
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011487	nucleus
PGSC0003DMT400021687
PGSC0003DMT400031329	nucleus
PGSC0003DMT400037827	nucleus
PGSC0003DMT400039033	nucleus
PGSC0003DMT400040287	endoplasmic reticulum
PGSC0003DMT400041637	nucleus
PGSC0003DMT400049672
PGSC0003DMT400051898
PGSC0003DMT400057203
PGSC0003DMT400064307	nucleus
PGSC0003DMT400066557	nucleus
PGSC0003DMT400068627	nucleus
PGSC0003DMT400068629	nucleus
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	PGSC0003DMT400040287	AT1G70210.1	20407024
AT3G19150.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT3G19150.1	PGSC0003DMT400077428	AT3G48750.1	11449057
AT3G19150.1	PGSC0003DMT400011487	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400031329	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400064307	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400068627	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400068629	AT3G50070.1	20407024
AT3G19150.1	PGSC0003DMT400049672	AT3G54650.1	18948957
AT3G19150.1	PGSC0003DMT400051898	AT3G54650.1	18948957
AT3G19150.1	PGSC0003DMT400039033	AT4G03270.1	20407024
AT3G19150.1	PGSC0003DMT400066557	AT4G34160.1	20407024
AT3G19150.1	PGSC0003DMT400037827	AT5G10440.1	20407024
AT3G19150.1	PGSC0003DMT400041637	AT5G10440.1	20407024
AT3G19150.1	PGSC0003DMT400057203	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090680.2.1	Tomato	nucleus	75.58	77.36
GSMUA_Achr10P...	Banana	cytosol	12.44	46.55
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	11.06	40.68
VIT_07s0031g00800.t01	Wine grape	plastid	31.34	32.08
TraesCS5A01G240600.1	Wheat	plastid	11.52	28.09
KRH04631	Soybean	plastid	21.2	27.38
EER99015	Sorghum	plastid	10.6	27.06
KRH76992	Soybean	nucleus, plastid	24.42	26.77
AT3G19150.1	Thale cress	nucleus	23.96	26.53
KRH57804	Soybean	plastid	22.12	26.09
KRH28480	Soybean	plastid	23.96	25.37
TraesCS5D01G247100.1	Wheat	plastid	15.21	25.19
PGSC0003DMT400066394	Potato	nucleus	22.12	25.0
Bra018812.1-P	Field mustard	nucleus	18.43	24.24
CDY50958	Canola	nucleus	18.43	24.1
TraesCS5B01G238600.1	Wheat	plastid	13.82	23.62
AT1G49620.3	Thale cress	nucleus	21.66	23.5
CDX99264	Canola	nucleus	17.97	22.16
GSMUA_Achr2P22370_001	Banana	nucleus	20.74	21.63
CDY28100	Canola	nucleus	18.43	21.62
CDX92305	Canola	nucleus	17.51	21.59
Bra001736.1-P	Field mustard	nucleus	17.05	20.9
CDX82309	Canola	nucleus	17.97	20.42
GSMUA_Achr10P...	Banana	nucleus, plastid	20.74	20.27
CDY22987	Canola	nucleus	17.51	19.79
HORVU5Hr1G068770.6	Barley	nucleus	13.36	18.59
Bra022391.1-P	Field mustard	nucleus	9.22	13.79

Protein Annotations

EntrezGene:102596697	MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004860
GO:GO:0004861	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006469	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	UniProt:M1BAE7	PFAM:PF02234	EnsemblPlantsGene:PGSC0003DMG400015770
PGSC:PGSC0003DMG400015770	EnsemblPlants:PGSC0003DMT400040785	PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF39	UniParc:UPI0002949286
RefSeq:XP_006339908.1	RefSeq:XP_006339909.1	SEG:seg	:	:	:

Description

Cyclin-dependent kinase inhibitor [Source:PGSC_GENE;Acc:PGSC0003DMG400015770]

Coordinates

chr2:-:43976312..43978047

Molecular Weight (calculated)

24630.0 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.691

Length

217 amino acids

Sequence
(BLAST)

001: MRRRYKCKSK GIIGEVVIME VAEVAVKMTR EREVLEVVDT RKRKKRDGDL EMSPTVARVR RNSVVSVVPA SFESPASELS SQGNTVSCKP ANFHDGLASG
101: FGDDESSNVT KGSSKFVDLD EDSVEIATSY SELRESRETI LSSKFKVEFH KVESTPKPQH AKSCRRRLTE AIMPSEAELD EFFAAAEKDL HKHFAEKYNF
201: DFAKEEPLEG RYEWVRQ

Best Arabidopsis Sequence Match ( AT3G50630.1 )
(BLAST)

001: MAAVRRRERD VVEENGVTTT TVKRRKMEEE VDLVESRIIL SPCVQATNRG GIVARNSAGA SETSVVIVRR RDSPPVEEQC QIEEEDSSVS CCSTSEEKSK
101: RRIEFVDLEE NNGDDRETET SWIYDDLNKS EESMNMDSSS VAVEDVESRR RLRKSLHETV KEAELEDFFQ VAEKDLRNKL LECSMKYNFD FEKDEPLGGG
201: RYEWVKLNP

Arabidopsis Description

KRP2Cyclin-dependent kinase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.