CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91226	nucleus
EER92677	nucleus
EER93780
EER96424	nucleus, nucleus
EER99528	nucleus
EES04403
EES07560	nucleus
EES12225
EES17294	nucleus
KXG19603	nucleus
KXG40336
OQU79521
OQU89443	endoplasmic reticulum

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	OQU89443	AT1G70210.1	20407024
AT3G19150.1	EES12225	AT1G71380.1	20706207
AT3G19150.1	EES04403	AT3G48750.1	11449057
AT3G19150.1	KXG40336	AT3G48750.1	11449057
AT3G19150.1	EER96424	AT3G50070.1	20407024
AT3G19150.1	EER93780	AT3G54650.1	18948957
AT3G19150.1	OQU79521	AT3G54650.1	18948957
AT3G19150.1	EER99528	AT4G03270.1	20407024
AT3G19150.1	EER96424	AT4G34160.1	20407024
AT3G19150.1	EER91226	AT4G37630.1	20407024
AT3G19150.1	EER92677	AT4G37630.1	20407024
AT3G19150.1	EES17294	AT4G37630.1	20407024
AT3G19150.1	EES07560	AT5G10440.1	20407024
AT3G19150.1	KXG19603	AT5G10440.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G240600.1	Wheat	plastid	52.94	50.56
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	32.94	47.46
GSMUA_Achr10P...	Banana	cytosol	30.59	44.83
TraesCS5D01G247100.1	Wheat	plastid	55.29	35.88
TraesCS5B01G238600.1	Wheat	plastid	47.06	31.5
HORVU5Hr1G068770.6	Barley	nucleus	48.24	26.28
KRH04631	Soybean	plastid	36.47	18.45
CDY28100	Canola	nucleus	36.47	16.76
CDX99264	Canola	nucleus	34.12	16.48
CDX92305	Canola	nucleus	32.94	15.91
KRH57804	Soybean	plastid	34.12	15.76
Bra018812.1-P	Field mustard	nucleus	30.59	15.76
CDY50958	Canola	nucleus	30.59	15.66
KRH71159	Soybean	nucleus, plastid	31.76	15.34
KRH76992	Soybean	nucleus, plastid	35.29	15.15
PGSC0003DMT400066394	Potato	nucleus	34.12	15.1
VIT_07s0031g00800.t01	Wine grape	plastid	37.65	15.09
Bra001736.1-P	Field mustard	nucleus	30.59	14.69
VIT_03s0063g00670.t01	Wine grape	nucleus	37.65	14.61
KRH28480	Soybean	plastid	34.12	14.15
CDX82309	Canola	nucleus	31.76	14.14
CDY22987	Canola	nucleus	31.76	14.06
KRH50258	Soybean	nucleus, plastid	30.59	13.9
AT1G49620.3	Thale cress	nucleus	31.76	13.5
Solyc01g108610.2.1	Tomato	nucleus	34.12	13.3
AT3G19150.1	Thale cress	nucleus	29.41	12.76
GSMUA_Achr10P...	Banana	nucleus, plastid	32.94	12.61
GSMUA_Achr2P22370_001	Banana	nucleus	29.41	12.02
Solyc02g090680.2.1	Tomato	nucleus	29.41	11.79
Bra022391.1-P	Field mustard	nucleus	18.82	11.03
PGSC0003DMT400040785	Potato	nucleus	27.06	10.6

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	EntrezGene:8083227	UniProt:C5X2C8	InterPro:CDI	EnsemblPlants:EER99015
ProteinID:EER99015	ProteinID:EER99015.1	GO:GO:0003674	GO:GO:0004861	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0007049	GO:GO:0007050	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0071901	PFAM:PF02234
PIRSF:PIRSF017811	PANTHER:PTHR10265	PANTHER:PTHR10265:SF21	EnsemblPlantsGene:SORBI_3002G227100	UniParc:UPI0001A8418A	RefSeq:XP_002462494.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:61909895..61913947

Molecular Weight (calculated)

8904.5 Da

IEP (calculated)

9.142

GRAVY (calculated)

-0.371

Length

85 amino acids

Sequence
(BLAST)

1: MAAAAATATT TVVPRCSKRE GDIAGAGTSP NKGKIGRSSP PAEEVEAFLA AAESGMARRF AAKYNYDVVK DAPMDGRYEW VRVGP

Best Arabidopsis Sequence Match ( AT3G24810.1 )
(BLAST)

001: MGKYIKKSKV AGAVSVKDKS HPPALGFRTR AAAAKNLALH RLRSHSDEAD SFNYLQLRSR RLVKLPLLTN TRKQQKQQLI PSVNQCQTKN PRASSGPAKK
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP

Arabidopsis Description

KRP5Cyclin-dependent kinase inhibitor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.