Factsheet for Solyc01g108610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107730.2.1	nucleus
Solyc02g064860.1.1	nucleus
Solyc02g064900.1.1	nucleus
Solyc02g064910.1.1	nucleus
Solyc02g092980.2.1	nucleus
Solyc05g006050.2.1	endoplasmic reticulum
Solyc05g051410.2.1	nucleus
Solyc06g084060.2.1
Solyc07g054950.1.1	nucleus
Solyc07g064510.2.1
Solyc08g066330.1.1
Solyc09g065880.2.1
Solyc11g010460.1.1	nucleus
Solyc11g040340.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19150.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT3G19150.1	Solyc11g040340.1.1	AT1G71380.1	20706207
AT3G19150.1	Solyc08g066330.1.1	AT3G48750.1	11449057
AT3G19150.1	Solyc02g064860.1.1	AT3G50070.1	20407024
AT3G19150.1	Solyc02g064900.1.1	AT3G50070.1	20407024
AT3G19150.1	Solyc02g064910.1.1	AT3G50070.1	20407024
AT3G19150.1	Solyc02g092980.2.1	AT3G50070.1	20407024
AT3G19150.1	Solyc06g084060.2.1	AT3G54650.1	18948957
AT3G19150.1	Solyc09g065880.2.1	AT3G54650.1	18948957
AT3G19150.1	Solyc07g054950.1.1	AT4G03270.1	20407024
AT3G19150.1	Solyc01g107730.2.1	AT4G34160.1	20407024
AT3G19150.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT3G19150.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT3G19150.1	Solyc07g064510.2.1	AT5G54900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066394	Potato	nucleus	67.43	76.56
GSMUA_Achr10P...	Banana	cytosol	12.84	48.28
GSMUA_Achr9P27040_001	Banana	cytosol, mitochondrion, nucleus	12.84	47.46
TraesCS5A01G240600.1	Wheat	plastid	15.6	38.2
KRH71159	Soybean	nucleus, plastid	28.44	35.23
EER99015	Sorghum	plastid	13.3	34.12
KRH50258	Soybean	nucleus, plastid	28.9	33.69
TraesCS5B01G238600.1	Wheat	plastid	19.27	33.07
CDY50958	Canola	nucleus	24.77	32.53
VIT_03s0063g00670.t01	Wine grape	nucleus	32.57	32.42
Bra018812.1-P	Field mustard	nucleus	24.31	32.12
CDY28100	Canola	nucleus	26.61	31.35
Bra001736.1-P	Field mustard	nucleus	25.23	31.07
CDX82309	Canola	nucleus	27.06	30.89
CDY22987	Canola	nucleus	27.06	30.73
AT1G49620.3	Thale cress	nucleus	27.52	30.0
AT3G19150.1	Thale cress	nucleus	24.77	27.55
TraesCS5D01G247100.1	Wheat	plastid	16.51	27.48
CDX99264	Canola	nucleus	22.02	27.27
CDX92305	Canola	nucleus	22.02	27.27
HORVU5Hr1G068770.6	Barley	nucleus	16.51	23.08
Solyc02g090680.2.1	Tomato	nucleus	21.56	22.17
Bra022391.1-P	Field mustard	nucleus	14.68	22.07
GSMUA_Achr2P22370_001	Banana	nucleus	17.43	18.27
GSMUA_Achr10P...	Banana	nucleus, plastid	17.43	17.12

Protein Annotations

MapMan:13.1.1.3.1	Gene3D:4.10.365.10	InterPro:CDI	GO:GO:0003674	GO:GO:0004860	GO:GO:0004861
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006469
GO:GO:0007049	GO:GO:0007050	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538
GO:GO:0030234	GO:GO:0071901	UniProt:K4B376	PFAM:PF02234	PIRSF:PIRSF017811	PANTHER:PTHR10265
PANTHER:PTHR10265:SF39	EnsemblPlantsGene:Solyc01g108610.2	EnsemblPlants:Solyc01g108610.2.1	UniParc:UPI0002768426	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:95869493..95871002

Molecular Weight (calculated)

24103.9 Da

IEP (calculated)

5.229

GRAVY (calculated)

-0.836

Length

218 amino acids

Sequence
(BLAST)

001: MGEFLKKCEK INGGMKVTEL GNGGLRIRDN DVEEEVTSNC SMSYSTKRRK FGSVTDVDFS ENSASPATSV TSVHIPTNSQ CSSCYESGEV MMKSILKSLD
101: LKAEKFGTDN SASFNGGFSE NFKPIDQPNP PSEHCGDSED MESSSTTTKK SSSSASAPRK QLSASKVPPE AEIEEFFSAA EKREQKRFAE KYNYDIVKDA
201: PLEGRYQWVS LKPRRINE

Best Arabidopsis Sequence Match ( AT1G49620.3 )
(BLAST)

001: MSLREMSETK PKRDSEYEGS NIKRMRLDDD DDVLRSPTRT LSSSSSSSLA YSVSDSGGFC SVALSEEEDD HLSSSISSGC SSSETNEIAT RLPFSDLEAH
101: EISETEISTL LTNNFRKQGI SSSENLGETA EMDSATTEMR DQRKTEKKKK MEKSPTQAEL DDFFSAAERY EQKRFTEKYN YDIVNDTPLE GRYQWVSLKP

Arabidopsis Description

KRP7Cyclin-dependent kinase inhibitor family protein [Source:TAIR;Acc:AT1G49620]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.