Factsheet for Solyc06g084060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1
Solyc02g090680.2.1
Solyc09g091780.2.1
Solyc12g098310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Solyc09g091780.2.1	AT2G32710.1	18948957
AT3G54650.1	Solyc12g098310.1.1	AT2G32710.1	18948957
AT3G54650.1	Solyc01g108610.2.1	AT3G19150.1	18948957
AT3G54650.1	Solyc02g090680.2.1	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051898	Potato	cytosol	94.75	94.92
Solyc09g065880.2.1	Tomato	nucleus	72.08	71.96
VIT_07s0141g00330.t01	Wine grape	plastid	64.3	66.2
KRH67292	Soybean	cytosol	55.16	61.16
KRH71335	Soybean	nucleus	60.24	60.34
CDX73462	Canola	plastid	57.02	60.18
CDX78253	Canola	plastid	56.68	59.71
KRH32101	Soybean	nucleus	59.73	59.63
KRG95622	Soybean	nucleus, plastid	60.41	59.5
GSMUA_Achr4P21010_001	Banana	mitochondrion	48.56	58.69
GSMUA_Achr2P12640_001	Banana	plastid	55.16	58.01
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	46.02	58.0
Bra007086.1-P	Field mustard	plastid	56.51	57.59
CDY64339	Canola	plastid	54.65	57.07
Os03t0633400-01	Rice	extracellular, vacuole	32.32	56.85
CDY55831	Canola	mitochondrion	47.21	56.25
AT3G54650.1	Thale cress	plastid	55.16	54.97
TraesCS5B01G382000.4	Wheat	plastid	44.84	50.48
TraesCS5A01G378400.1	Wheat	plastid	48.05	50.18
TraesCS5D01G388400.1	Wheat	plastid	47.55	50.09
Os12t0601000-00	Rice	plastid	47.21	49.82
Zm00001d030990_P001	Maize	cytosol	49.41	49.16
EER93780	Sorghum	plastid	47.88	47.64
Zm00001d041414_P002	Maize	cytosol	47.72	47.0
TraesCS5A01G058400.2	Wheat	plastid	47.21	46.66
KRG90050	Soybean	cytosol	4.57	46.55
TraesCS5D01G069500.1	Wheat	plastid	46.87	46.48
TraesCS5B01G058300.1	Wheat	plastid	46.87	46.4
Zm00001d033321_P001	Maize	plastid	44.5	45.58
OQU79521	Sorghum	plastid	47.21	45.15
HORVU5Hr1G014320.7	Barley	plastid	47.55	41.14
Bra014802.1-P	Field mustard	plastid	54.31	41.0
HORVU5Hr1G093590.1	Barley	extracellular	40.61	40.96
HORVU5Hr1G093570.1	Barley	plastid	10.32	36.75
Os03t0633100-00	Rice	plastid	10.49	30.1

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	UniProt:K4CAR1	InterPro:LRR_dom_sf	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc06g084060.2
EnsemblPlants:Solyc06g084060.2.1	UniParc:UPI000276B7D5	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:49319438..49324435

Molecular Weight (calculated)

64401.0 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.158

Length

591 amino acids

Sequence
(BLAST)

001: MQGRQPHPHT TTPISEVILP KRGKKRGSYS CGRCGVPKKG HVCNFPKNLN PIDNPSPNPN SSLLASPPSV VRPQPPPPLP QRHVLPQLRR ALSFDDVDVN
101: DSPGSDDEGD FSDLDNESDR VGSGSGIGTL PSSCLWEVFK RLPPPALLSS ARVCKGWLES SRRIWKSAVE LRLRVPVNAQ IGLVGSVLKK CPGLVKLSLR
201: MESDIDATML ACIAFSCPKL DSMEILMCNT SVNRITGDEL GRFVAEKRSL TNLKMEGCSN LGGFTLCSTS LSTLSLSDLY CHAKMVFNCP NLKDVSLDFS
301: HQENDTTDLT LMVDGLGRSC PRLQNIHIAS IRLTHAVVLA LTAANLRGLR MLSLVLGSEI TDASVAAIAS SYSNLELLDL SGSSISDSGI GMICNIFPET
401: LSKLLLALCP NITSSGIQFA AAQLPNLELM DCGMTISDPD LDNPTSQENN DLQLQRTPNS KQHLIYQKLI IKHTCLKKLS LWGCSGLDAL YLNCPELKDL
501: NLNSCTNLNP ERLLLQCPNL EYVHALGCQD ALVGTLKNQV CADFMGVEDH SHCKRLPDGS KRIKVPDLFS PQPNDKKTKR ISKRCCTVLV N

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.