CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH04631
KRH28480
KRH50258
KRH57804
KRH71159
KRH76992

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	KRG92238	AT2G32710.1	18948957
AT3G54650.1	KRH04631	AT3G19150.1	18948957
AT3G54650.1	KRH28480	AT3G19150.1	18948957
AT3G54650.1	KRH50258	AT3G19150.1	18948957
AT3G54650.1	KRH57804	AT3G19150.1	18948957
AT3G54650.1	KRH71159	AT3G19150.1	18948957
AT3G54650.1	KRH76992	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32101	Soybean	nucleus	88.81	88.51
KRH67292	Soybean	cytosol	63.05	69.79
KRG95622	Soybean	nucleus, plastid	70.17	69.0
VIT_07s0141g00330.t01	Wine grape	plastid	64.92	66.72
PGSC0003DMT400049672	Potato	nucleus	62.03	61.51
Solyc09g065880.2.1	Tomato	nucleus	61.69	61.49
CDX73462	Canola	plastid	57.63	60.71
CDX78253	Canola	plastid	57.29	60.25
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	60.34	60.24
PGSC0003DMT400051898	Potato	cytosol	59.66	59.66
Bra007086.1-P	Field mustard	plastid	57.97	58.97
CDY55831	Canola	mitochondrion	49.32	58.67
Os03t0633400-01	Rice	extracellular, vacuole	33.39	58.63
CDY64339	Canola	plastid	56.1	58.48
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.93	57.78
AT3G54650.1	Thale cress	plastid	57.8	57.5
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.12	56.85
GSMUA_Achr2P12640_001	Banana	plastid	53.73	56.41
Os12t0601000-00	Rice	plastid	49.49	52.14
TraesCS5D01G388400.1	Wheat	plastid	48.47	50.98
TraesCS5B01G382000.4	Wheat	plastid	45.25	50.86
TraesCS5A01G378400.1	Wheat	plastid	48.64	50.71
Zm00001d030990_P001	Maize	cytosol	50.17	49.83
EER93780	Sorghum	plastid	49.83	49.49
KRG90050	Soybean	cytosol	4.75	48.28
Zm00001d041414_P002	Maize	cytosol	48.98	48.17
Zm00001d033321_P001	Maize	plastid	46.27	47.31
TraesCS5A01G058400.2	Wheat	plastid	47.29	46.66
TraesCS5D01G069500.1	Wheat	plastid	47.12	46.64
TraesCS5B01G058300.1	Wheat	plastid	47.12	46.57
OQU79521	Sorghum	plastid	47.46	45.31
Bra014802.1-P	Field mustard	plastid	56.61	42.66
HORVU5Hr1G093590.1	Barley	extracellular	41.53	41.81
HORVU5Hr1G014320.7	Barley	plastid	48.14	41.58
HORVU5Hr1G093570.1	Barley	plastid	11.53	40.96
Os03t0633100-00	Rice	plastid	12.2	34.95

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100819793	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02000887	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_02G142300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JF47
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH71335	ProteinID:KRH71335	ProteinID:KRH71335.1	InterPro:LRR_dom_sf
PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002336D3D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:14678762..14683205

Molecular Weight (calculated)

64322.6 Da

IEP (calculated)

6.605

GRAVY (calculated)

-0.134

Length

590 amino acids

Sequence
(BLAST)

001: MDRPPIPAAL PPAHGGDAAD AAKHGKKRGS YNCGRCGLPK KGHNCTVKTL ASTADATPDS SLSVVSVPSA AAPSLRKPSS NLRRALSFDD LDERLPVVDR
101: SEPDEEVDSD VFDETDPDLD LDADACGLPA RLLWEVMRRL PPPGLLSAAK VCKGWRDTAK RMWRAAEELK IRVPANVPVG FVASMLQKCP GIVRLSLRME
201: SDFDSTMLAC IAFSCPNLEC MEILTFDTAT IRINGDELGR FVADKKSLKS LKMEGCSNLG GFVLCSSSLS TLWLSDLHSL SKMVFNCPQL REVSLEFSCQ
301: ENDSTDLKTM IEGLGRSCLR LQNIHIASIW LSHSAVLALT AAQLRGLRML SLVLGSEITD ASVAAIASSY PNLELLDLSG SGISDSGISM ICNVFPDTLT
401: RLLLALCPNV TSSGIQFATF QLPHLEIMDC GMTICDPNMQ NPTADENNCK LQKTSASNVH FTNQKLIIKH SRLKKLSLWG CTGLDALYLN CPRLIDLNLN
501: SCSNLHPGRL LLQCPNLENV HASGCQDMLI GAIQSQVHDA SADMENHSPS KRLPDGSKRI RVPHLLSEES PEPEKKRRRI ERQLCNVLLD

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.