Factsheet for Solyc09g065880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g108610.2.1
Solyc02g090680.2.1
Solyc09g091780.2.1
Solyc12g098310.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Solyc09g091780.2.1	AT2G32710.1	18948957
AT3G54650.1	Solyc12g098310.1.1	AT2G32710.1	18948957
AT3G54650.1	Solyc01g108610.2.1	AT3G19150.1	18948957
AT3G54650.1	Solyc02g090680.2.1	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049672	Potato	nucleus	94.93	94.45
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	71.96	72.08
VIT_07s0141g00330.t01	Wine grape	plastid	64.19	66.2
KRH67292	Soybean	cytosol	57.09	63.41
KRH71335	Soybean	nucleus	61.49	61.69
KRH32101	Soybean	nucleus	60.81	60.81
KRG95622	Soybean	nucleus, plastid	59.97	59.17
CDX73462	Canola	plastid	55.57	58.75
GSMUA_Achr4P21010_001	Banana	mitochondrion	48.48	58.69
GSMUA_Achr2P12640_001	Banana	plastid	55.41	58.36
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.95	58.0
CDX78253	Canola	plastid	54.9	57.93
CDY64339	Canola	plastid	55.24	57.77
AT3G54650.1	Thale cress	plastid	57.43	57.34
Bra007086.1-P	Field mustard	plastid	55.91	57.07
CDY55831	Canola	mitochondrion	47.13	56.25
Os03t0633400-01	Rice	extracellular, vacuole	31.76	55.95
KRG90050	Soybean	cytosol	5.41	55.17
TraesCS5B01G382000.4	Wheat	plastid	44.76	50.48
TraesCS5D01G388400.1	Wheat	plastid	47.8	50.45
TraesCS5A01G378400.1	Wheat	plastid	48.14	50.35
Os12t0601000-00	Rice	plastid	47.13	49.82
Zm00001d030990_P001	Maize	cytosol	48.99	48.82
EER93780	Sorghum	plastid	48.82	48.65
Zm00001d041414_P002	Maize	cytosol	48.48	47.83
Zm00001d033321_P001	Maize	plastid	46.28	47.49
TraesCS5A01G058400.2	Wheat	plastid	47.3	46.82
TraesCS5D01G069500.1	Wheat	plastid	47.13	46.81
TraesCS5B01G058300.1	Wheat	plastid	46.96	46.57
OQU79521	Sorghum	plastid	47.13	45.15
Bra014802.1-P	Field mustard	plastid	55.41	41.89
HORVU5Hr1G014320.7	Barley	plastid	47.8	41.43
HORVU5Hr1G093570.1	Barley	plastid	11.32	40.36
HORVU5Hr1G093590.1	Barley	extracellular	39.86	40.27
Os03t0633100-00	Rice	plastid	12.33	35.44

Protein Annotations

EnsemblPlants:Solyc09g065880.2.1	EnsemblPlantsGene:Solyc09g065880.2	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000276CB37	UniProt:K4CUL4	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr9:-:64152704..64157501

Molecular Weight (calculated)

64697.2 Da

IEP (calculated)

6.875

GRAVY (calculated)

-0.120

Length

592 amino acids

Sequence
(BLAST)

001: MEGRHSHPST PIPEDFVQKR GKKRGSYNCG RCGLPKKGHV CDLTKEFSEV PTPTSSDAKS FVLPSQLSVI RSNPTPPLPP PRQPVVQLRR ALSFDDIGVT
101: DESPGSDDEG EGEFLDFESE LDLGGSGKLP ANCLWEVLKR LPPSSLLSSA KVCKGWRDVS RRIWKSAEEL RLEVPMKAQI GLVGSVLQKC PGLVKLSLRM
201: KSDVDATMLA CIAFSCPNLD SLEILTSDTS VNRITGDDLG RFVADKRCLT NLKMEGCSNL GGFTLSSTSL STLCLLELFC HSKMVFNCPN LKEISLIFSC
301: QENENTDLTA MVNGLGRSCP RLQNIHVASV RLTHAVVLAL TAANLRGLRM LSLVLGSEIT DASVAAIVSS YSRLELLDLS GSSISDSGIG MICNVFPETL
401: LKLLLALCPN ITSSGIQFAA AQLPNLELMD CGMSICDPDL DSPAAQENDN VDIQRTPSSK LHLIYQKLII KHSHLKKLSL WGCSGLDALY LNCPELNDLN
501: LNSCMNLNPG RLLLQCPNLE SVHASGCQDT LVEALQNQVC GDFMVEDDHF PCKRLPDGSK RIRVPHSYSP QPFDDGKRKR RLSKQRCAVL VY

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.