Factsheet for Zm00001d033321_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014046_P001
Zm00001d027585_P001
Zm00001d032732_P002
Zm00001d048363_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	Zm00001d014046_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d027585_P001	AT2G32710.1	18948957
AT3G54650.1	Zm00001d032732_P002	AT2G32710.1	18948957
AT3G54650.1	Zm00001d048363_P001	AT2G32710.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93780	Sorghum	plastid	80.76	78.45
Os03t0633400-01	Rice	extracellular, vacuole	44.37	76.19
TraesCS5D01G388400.1	Wheat	plastid	66.9	68.81
TraesCS5A01G378400.1	Wheat	plastid	66.72	68.02
TraesCS5B01G382000.4	Wheat	plastid	61.35	67.43
HORVU5Hr1G093570.1	Barley	plastid	18.37	63.86
Os03t0633100-00	Rice	plastid	20.97	58.74
Zm00001d030990_P001	Maize	cytosol	58.41	56.73
HORVU5Hr1G093590.1	Barley	extracellular	55.63	54.78
GSMUA_Achr4P21010_001	Banana	mitochondrion	45.93	54.19
Zm00001d041414_P002	Maize	cytosol	55.98	53.83
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	43.33	53.3
GSMUA_Achr2P12640_001	Banana	plastid	50.61	51.96
VIT_07s0141g00330.t01	Wine grape	plastid	50.26	50.52
KRH67292	Soybean	cytosol	44.71	48.41
KRG90050	Soybean	cytosol	4.85	48.28
CDY64339	Canola	plastid	45.41	46.29
Solyc09g065880.2.1	Tomato	nucleus	47.49	46.28
KRH71335	Soybean	nucleus	47.31	46.27
KRG95622	Soybean	nucleus, plastid	47.83	46.0
KRH32101	Soybean	nucleus	47.14	45.95
CDX73462	Canola	plastid	44.19	45.54
CDX78253	Canola	plastid	44.19	45.45
CDY55831	Canola	mitochondrion	38.99	45.36
PGSC0003DMT400049672	Potato	nucleus	46.62	45.21
PGSC0003DMT400051898	Potato	cytosol	45.93	44.92
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	45.58	44.5
Bra007086.1-P	Field mustard	plastid	44.54	44.31
AT3G54650.1	Thale cress	plastid	45.23	44.01
Bra014802.1-P	Field mustard	plastid	45.41	33.46

Protein Annotations

EnsemblPlants:Zm00001d033321_P001	EnsemblPlants:Zm00001d033321_T001	EnsemblPlantsGene:Zm00001d033321	EntrezGene:103643714	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44840	PFAM:PF00646	ProteinID:ONM07233.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0008441E8A	UniProt:A0A1D6KXQ8	MapMan:19.2.2.8.1.4.6	:	:

Description

F-box/LRR-repeat protein 17

Coordinates

chr1:-:258938239..258948894

Molecular Weight (calculated)

62135.4 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.102

Length

577 amino acids

Sequence
(BLAST)

001: MASLPKPPPP PRPKTRGNYN CGRCGQPKKG HVCVGPGPGP GGAASPSSSS GAGGEHGLRR ALSFDEAGTP SSPEKKPKVE DVDEAELDEE ATVDVGARAV
101: SREVMAEVLH RLGPRGVMAA AGVSRGWRDC AGRVWRAAEE LRLRVLASSG AGLLAALLPR CPALSRLHLR MESDVDGTTL ACIAFSCPSL RTLEITMAAD
201: AVNRMTGEDL SRFVSEKSSL SALKIGGCSN LDILNLCSSS LSILWLSDLC SLSKSVMNCP NMSELSLCFT EHSSDCTNLI TLMDGLGRTC PNLEKMHISS
301: KQLSNEAVCA LENANLRGLF MLSLILGSKI TDAAVASIVR SCASLELLDL SGSSISDNGV GMICKAYPRT LSRLLLALCP NVTTRGIQLA TAQLPCLQLM
401: DCGMSLCANV KNEKEGPYFG EINGGIRIIR KLSILKRQPI HQKLIIKHGN LKKLSLWGCS ALDALYLNCP ELNDLNLNSC TNLHPVDIIQ QIRHVHDLHT
501: DMQATKPNRS TYLNWSLAWS EQRVLNEFAA VEPSLPCKRL ADGSKRVQLP QFLKQQPSKD NKLIELSQTQ CTVHLGS

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.