Factsheet for GSMUA_Achr4P28520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
extracellular 1
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P00900_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P20410_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr2P11790_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr4P26490_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P12920_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P20430_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P21770_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr6P36640_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr8P12510_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr2P22370_001	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr9P27040_001	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P21010_001	Banana	mitochondrion	77.61	74.44
GSMUA_Achr2P12640_001	Banana	plastid	79.96	66.73
Os03t0633400-01	Rice	extracellular, vacuole	45.2	63.1
VIT_07s0141g00330.t01	Wine grape	plastid	61.83	50.52
Os12t0601000-00	Rice	plastid	59.91	50.18
CDY55831	Canola	mitochondrion	51.6	48.79
Zm00001d030990_P001	Maize	cytosol	60.55	47.81
TraesCS5D01G388400.1	Wheat	plastid	57.14	47.77
TraesCS5A01G378400.1	Wheat	plastid	57.14	47.35
CDX78253	Canola	plastid	55.65	46.52
TraesCS5B01G382000.4	Wheat	plastid	51.81	46.29
KRH67292	Soybean	cytosol	52.45	46.15
CDY64339	Canola	plastid	55.65	46.11
PGSC0003DMT400051898	Potato	cytosol	58.0	46.1
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	58.0	46.02
Solyc09g065880.2.1	Tomato	nucleus	58.0	45.95
KRH71335	Soybean	nucleus	57.78	45.93
CDX73462	Canola	plastid	54.8	45.89
EER93780	Sorghum	plastid	57.78	45.62
PGSC0003DMT400049672	Potato	nucleus	57.78	45.55
TraesCS5D01G069500.1	Wheat	plastid	57.57	45.3
KRG95622	Soybean	nucleus, plastid	57.78	45.17
TraesCS5B01G058300.1	Wheat	plastid	57.36	45.06
Zm00001d041414_P002	Maize	cytosol	57.57	45.0
KRH32101	Soybean	nucleus	56.72	44.93
TraesCS5A01G058400.2	Wheat	plastid	57.14	44.82
Bra007086.1-P	Field mustard	plastid	55.22	44.66
AT3G54650.1	Thale cress	plastid	56.29	44.52
HORVU5Hr1G093590.1	Barley	extracellular	55.22	44.2
Zm00001d033321_P001	Maize	plastid	53.3	43.33
OQU79521	Sorghum	plastid	56.5	42.88
HORVU5Hr1G014320.7	Barley	plastid	58.0	39.82
KRG90050	Soybean	cytosol	4.9	39.66
Bra014802.1-P	Field mustard	plastid	56.08	33.59
HORVU5Hr1G093570.1	Barley	plastid	7.46	21.08
Os03t0633100-00	Rice	plastid	8.74	19.9

Protein Annotations

EnsemblPlants:GSMUA_Achr4P28520_001	EnsemblPlants:GSMUA_Achr4T28520_001	EnsemblPlantsGene:GSMUA_Achr4G28520_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44840	PFAM:PF00646	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000294F5E9	UniProt:M0SSW4	MapMan:19.2.2.8.1.4.6	:

Description

F-box/LRR-repeat protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr4G28520_001]

Coordinates

chr4:+:26925648..26930041

Molecular Weight (calculated)

52237.9 Da

IEP (calculated)

8.208

GRAVY (calculated)

0.097

Length

469 amino acids

Sequence
(BLAST)

001: MVEVLRRLSP TELMRAAAVC RGWRECVRRV WRCAEELRLR VSPRSQVAFV GSVLHKCAGL ARLTLRMESD FDATMLACVA FSLPNLEAFE LNMAENTVNR
101: ITGDELGNFA AKKRCLSTLK FEGCTNIGFV NISSSSLLML WLSDLYCISK MVLKCPNLRE LSLDFTRQVN DSTDLATMLE SLGCTCPCLR NIHIASLQLC
201: NEAVLSLASA NIRDLRMLSL VLGSRITDAA VTAIVSCYTS LELLDLSGSS ITDTGIRMIC NVFPETLSRL LLALCPNITS SGIQFAAAQL PLLQLIDCGM
301: SIRDTDSQYE SSKQNISPIK RRTGEYNKWQ RLSTTKSSHV YQKLIIKHGN LRKLSLWGCS GLDALYLNCP ELNDLNLNSC TNLHPEELLL QCEKLKNVHA
401: SGCHDMLIGA VRNQVLNEFS TAENHLPCKR LADGSKRIQV PHFVQQVRAS IYRAMLASQH LGGVFFLFF

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.