Factsheet for GSMUA_Achr2P12640_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr11P...	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P00900_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr1P20410_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr2P11790_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr4P26490_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P12920_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P20430_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr5P21770_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr6P36640_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr8P12510_001	AT2G32710.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr10P...	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr2P22370_001	AT3G19150.1	18948957
AT3G54650.1	GSMUA_Achr9P27040_001	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	66.73	79.96
GSMUA_Achr4P21010_001	Banana	mitochondrion	69.22	79.55
Os03t0633400-01	Rice	extracellular, vacuole	38.97	65.18
VIT_07s0141g00330.t01	Wine grape	plastid	59.79	58.54
Os12t0601000-00	Rice	plastid	57.83	58.04
TraesCS5D01G388400.1	Wheat	plastid	56.58	56.68
TraesCS5A01G378400.1	Wheat	plastid	56.58	56.18
PGSC0003DMT400051898	Potato	cytosol	58.19	55.42
Solyc09g065880.2.1	Tomato	nucleus	58.36	55.41
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	58.01	55.16
TraesCS5B01G382000.4	Wheat	plastid	51.42	55.05
PGSC0003DMT400049672	Potato	nucleus	57.83	54.62
Zm00001d030990_P001	Maize	cytosol	57.3	54.21
KRH67292	Soybean	cytosol	51.25	54.03
KRH71335	Soybean	nucleus	56.41	53.73
KRH32101	Soybean	nucleus	55.87	53.04
EER93780	Sorghum	plastid	56.05	53.03
TraesCS5A01G058400.2	Wheat	plastid	56.41	53.01
KRG95622	Soybean	nucleus, plastid	56.58	53.0
TraesCS5B01G058300.1	Wheat	plastid	56.23	52.93
CDX73462	Canola	plastid	52.67	52.86
TraesCS5D01G069500.1	Wheat	plastid	56.05	52.85
CDX78253	Canola	plastid	52.67	52.76
Bra007086.1-P	Field mustard	plastid	53.02	51.38
CDY55831	Canola	mitochondrion	45.2	51.21
Zm00001d041414_P002	Maize	cytosol	54.63	51.17
CDY64339	Canola	plastid	51.25	50.88
Zm00001d033321_P001	Maize	plastid	51.96	50.61
AT3G54650.1	Thale cress	plastid	53.2	50.42
OQU79521	Sorghum	plastid	53.91	49.03
HORVU5Hr1G093590.1	Barley	extracellular	48.75	46.76
HORVU5Hr1G014320.7	Barley	plastid	56.58	46.56
KRG90050	Soybean	cytosol	4.63	44.83
HORVU5Hr1G093570.1	Barley	plastid	11.74	39.76
Bra014802.1-P	Field mustard	plastid	52.31	37.55
Os03t0633100-00	Rice	plastid	12.1	33.01

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G12640_001	EnsemblPlants:GSMUA_Achr2P12640_001	EnsemblPlants:GSMUA_Achr2T12640_001	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0S7F5	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR44840	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000295E254
SEG:seg	:	:	:	:	:

Description

F-box/LRR-repeat protein 17 [Source:GMGC_GENE;Acc:GSMUA_Achr2G12640_001]

Coordinates

chr2:-:15043169..15048418

Molecular Weight (calculated)

62106.1 Da

IEP (calculated)

7.873

GRAVY (calculated)

-0.163

Length

562 amino acids

Sequence
(BLAST)

001: MIHHPPTAAA PARVVAPKKR GSYNCGRCGL PKKGHVCPSA DGGSASLHLP RSGNRLRRAL SFDEDRPSSS PAPALEDEDE REAGWDGEGS LPSSCMVEIL
101: RRLSPKELMR AVAVCRGWRE CVRKVWRSAE ELRLRVSPQS QIGFVGSVLH KCAGLTRLTL TMESDIDATM LACVAFSLPN LEAFEINMAE NVVNRITGDE
201: LGRFVAEKRC LSTLKVEGCT NIGFLSISSS SLSSLWLSNL YCISKMVFKC PNLRELSLDF TRQENDSTDL ITMMECLGRT CPRLRNIHVA SIHLSNEAVL
301: SLTSANLRDL RMLSLVLGSR ITDAAVTAIV SCCTSLELLD LSGSSITDSG IRMICNVFPE TLSRLLLALC PNITSNGVQF AAVQLPLLQL IDCGMSICDT
401: DYQNESAEEN VYPNNERSGE YTKCQKSSTM KSQKIYQKLI IKHGTLRKLS LWGCSGLDTL YLNCPELNDL NLNSCTNLHP ERLLLQCPNL KNVHASGCQD
501: MLIGAIRNQV LNEFAAAVKD HLPCKRLADG SKRVQVPHFV QQLSDDEKQK RRRMTQCIVH HD

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.