CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH04631
KRH28480
KRH50258
KRH57804
KRH71159
KRH76992

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	KRG92238	AT2G32710.1	18948957
AT3G54650.1	KRH04631	AT3G19150.1	18948957
AT3G54650.1	KRH28480	AT3G19150.1	18948957
AT3G54650.1	KRH50258	AT3G19150.1	18948957
AT3G54650.1	KRH57804	AT3G19150.1	18948957
AT3G54650.1	KRH71159	AT3G19150.1	18948957
AT3G54650.1	KRH76992	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67292	Soybean	cytosol	77.5	87.24
KRH71335	Soybean	nucleus	69.0	70.17
KRG90050	Soybean	cytosol	6.67	68.97
KRH32101	Soybean	nucleus	67.33	68.24
VIT_07s0141g00330.t01	Wine grape	plastid	61.5	64.29
Os03t0633400-01	Rice	extracellular, vacuole	34.17	61.01
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	59.5	60.41
PGSC0003DMT400051898	Potato	cytosol	59.17	60.17
Solyc09g065880.2.1	Tomato	nucleus	59.17	59.97
PGSC0003DMT400049672	Potato	nucleus	59.0	59.5
CDX73462	Canola	plastid	54.83	58.75
CDX78253	Canola	plastid	54.5	58.29
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.17	57.78
GSMUA_Achr4P21010_001	Banana	mitochondrion	46.67	57.26
CDY64339	Canola	plastid	53.83	57.07
AT3G54650.1	Thale cress	plastid	56.33	57.0
CDY55831	Canola	mitochondrion	47.0	56.85
GSMUA_Achr2P12640_001	Banana	plastid	53.0	56.58
Bra007086.1-P	Field mustard	plastid	54.5	56.38
TraesCS5D01G388400.1	Wheat	plastid	48.67	52.05
Os12t0601000-00	Rice	plastid	48.33	51.79
TraesCS5A01G378400.1	Wheat	plastid	48.5	51.41
TraesCS5B01G382000.4	Wheat	plastid	44.83	51.24
EER93780	Sorghum	plastid	50.67	51.18
Zm00001d030990_P001	Maize	cytosol	49.0	49.49
Zm00001d041414_P002	Maize	cytosol	48.83	48.83
TraesCS5D01G069500.1	Wheat	plastid	47.83	48.15
Zm00001d033321_P001	Maize	plastid	46.0	47.83
TraesCS5B01G058300.1	Wheat	plastid	47.5	47.74
TraesCS5A01G058400.2	Wheat	plastid	47.17	47.32
OQU79521	Sorghum	plastid	46.83	45.47
HORVU5Hr1G093590.1	Barley	extracellular	41.67	42.66
HORVU5Hr1G014320.7	Barley	plastid	48.0	42.17
Bra014802.1-P	Field mustard	plastid	53.5	41.0
HORVU5Hr1G093570.1	Barley	plastid	11.17	40.36
Os03t0633100-00	Rice	plastid	12.17	35.44

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100792669	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EMBL:ACUP02012121	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_19G161300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1N9M7
InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRG95622	ProteinID:KRG95622	ProteinID:KRG95622.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00023DDFBF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:42202046..42207856

Molecular Weight (calculated)

65270.3 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.157

Length

600 amino acids

Sequence
(BLAST)

001: MLPLPSSFTK PNSHTSQFTN HTMQHFHPEP HIAPTVSSDA KRSGKKRGSY NCGRCGLPKK GHDCTGKTAP TPTSASSATP SHSSFSAVSA PSSGSASRRP
101: LSHLRRALSF DEDEAGRLDP SEPADVWSVE DDLDSSGLPG NLLWEVLRRL PPAGLLTAAM VSRGWREMTR SLWRAAEELR IRVPAWAQVG FVSSILQKCP
201: GIVTLSLKME SDVDSTILAC IAFSCPNLAF LEISVSDPAV NRISGGEFAR FVADKKSLKS LKMEGCSNLG GFVLCSSSLS TLWLSDLYSL SKMVFNCPQL
301: REVSLEFAHQ ESDSTDLTTM VEGLGRSCPR LKNIHISSMH LSHAAVLALT AAQLRGLRML SLVLGSEVTD ASVAAIASSY LNLELLDLSG SSISDSGISM
401: ICNVFSETLT RLLLALCPNV TSSGIQFATA QLPHLELMDC GMTICEPNSH HPTADESNRK LQKTFATNLH LTNQKLIIKH SCLKKLSLWG CSGLDALYLN
501: CPQLNDLNLN SCRNLHPERL LLQCPSLENV YASGCQDMLI GAIQSQVCNA FTDMENPSPC KRLPDGSKRV RVPHLVNTES PEDEKKGRRK KRRLCNVVVD

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.