CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91497
EER95545
EER99015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	EER91497	AT2G32710.1	18948957
AT3G54650.1	EER95545	AT2G32710.1	18948957
AT3G54650.1	EER99015	AT3G19150.1	18948957

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0633400-01	Rice	extracellular, vacuole	47.14	83.33
Zm00001d033321_P001	Maize	plastid	78.45	80.76
TraesCS5B01G382000.4	Wheat	plastid	65.32	73.9
TraesCS5D01G388400.1	Wheat	plastid	69.7	73.8
TraesCS5A01G378400.1	Wheat	plastid	69.7	73.14
HORVU5Hr1G093570.1	Barley	plastid	18.18	65.06
HORVU5Hr1G093590.1	Barley	extracellular	58.59	59.39
GSMUA_Achr4P21010_001	Banana	mitochondrion	48.15	58.49
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	45.62	57.78
Os03t0633100-00	Rice	plastid	20.03	57.77
OQU79521	Sorghum	plastid	58.59	56.31
GSMUA_Achr2P12640_001	Banana	plastid	53.03	56.05
VIT_07s0141g00330.t01	Wine grape	plastid	51.68	53.48
KRH67292	Soybean	cytosol	47.31	52.72
KRG95622	Soybean	nucleus, plastid	51.18	50.67
KRH71335	Soybean	nucleus	49.49	49.83
CDY64339	Canola	plastid	47.31	49.65
CDX73462	Canola	plastid	46.3	49.11
CDX78253	Canola	plastid	46.3	49.02
Solyc09g065880.2.1	Tomato	nucleus	48.65	48.82
KRH32101	Soybean	nucleus	48.32	48.48
PGSC0003DMT400051898	Potato	cytosol	48.15	48.47
CDY55831	Canola	mitochondrion	40.4	48.39
KRG90050	Soybean	cytosol	4.71	48.28
PGSC0003DMT400049672	Potato	nucleus	47.98	47.9
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	47.64	47.88
Bra007086.1-P	Field mustard	plastid	46.63	47.76
AT3G54650.1	Thale cress	plastid	47.64	47.72
Bra014802.1-P	Field mustard	plastid	46.8	35.5

Protein Annotations

MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:8062474	UniProt:C5WS55	EnsemblPlants:EER93780	ProteinID:EER93780
ProteinID:EER93780.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PANTHER:PTHR44840	EnsemblPlantsGene:SORBI_3001G161800
SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.6740	UniParc:UPI0001A82B8B	RefSeq:XP_002466782.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:13318876..13325892

Molecular Weight (calculated)

63702.4 Da

IEP (calculated)

7.824

GRAVY (calculated)

-0.060

Length

594 amino acids

Sequence
(BLAST)

001: MASLPKPPPP PRPKTRGNYN CGRCGQPKKG HVCVGPVAPG PAPTPSPSSS SGAASATASA SAGGGEQQHR LRRALSFDEA GTTPSSPEKK PKVEDDADMA
101: EAELDDEEEG ATVDVGARRP VPTEVMAEVL RRLGPRGVLA AAGVSRGWRD CAGRVWRAAD ELRLRVLAAS GVALLAALLP RCTALSRLYL RMESDVDATT
201: LDCIAFSCPS LRTLEITMAA DAVNRITGED LSRFVSEKST LSVLKIGGCS NLDILNLCSS SLSILWLSDL CSLSKSVMNC PNMNELSLCF TQQSSDCTDL
301: VTLMDGLGRT CLNLKKMHIS SSQLSNEAVC ALENANLRGL CMLSLILGSK ITDAAVASIV RSCPSLELLD LSGSSISDNG VGMICKAFPH TLSRLLLALC
401: PNVTTRGIQL ATAQLPCLQL MDCGMSLCTN MKNEKEGPYF GELNGCIRII PKLSTLKRQP IHQKLIIKHG NLKKLSLWGC SAIDALYVNC PELNDLNLNS
501: CTNLHPERLL LQCPNLKNVH ASGCQDMLIG AIRNQVLNEF AAAEPSLPCK RLADGLKRVQ LPQFQKQQPL EDDKLIQLSQ TQCILVHNNI TRAS

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.