CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77280
CDX79470
CDX82309
CDX84726
CDX89042
CDX92305
CDX93698
CDX93699
CDX96963
CDX99264
CDY01389
CDY12181
CDY14922
CDY16470
CDY19160
CDY22987
CDY23793
CDY29370
CDY40610
CDY40611
CDY43408
CDY44209
CDY59640
CDY63159
CDY67544
CDY68971
CDY69121

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54650.1	CDX96963	AT1G10230.1	19277118
AT3G54650.1	CDY14922	AT1G10230.1	19277118
AT3G54650.1	CDY01389	AT2G25700.1	19277118
AT3G54650.1	CDY29370	AT2G25700.1	19277118
AT3G54650.1	CDY43408	AT2G25700.1	19277118
AT3G54650.1	CDY44209	AT2G25700.1	19277118
AT3G54650.1	CDY63159	AT2G25700.1	19277118
AT3G54650.1	CDY67544	AT2G25700.1	19277118
AT3G54650.1	CDY68971	AT2G25700.1	19277118
AT3G54650.1	CDX79470	AT2G32710.1	18948957
AT3G54650.1	CDX84726	AT2G32710.1	18948957
AT3G54650.1	CDY12181	AT2G32710.1	18948957
AT3G54650.1	CDY19160	AT2G32710.1	18948957
AT3G54650.1	CDY23793	AT2G32710.1	18948957
AT3G54650.1	CDY59640	AT2G32710.1	18948957
AT3G54650.1	CDX82309	AT3G19150.1	18948957
AT3G54650.1	CDX92305	AT3G19150.1	18948957
AT3G54650.1	CDX99264	AT3G19150.1	18948957
AT3G54650.1	CDY22987	AT3G19150.1	18948957
AT3G54650.1	CDX89042	AT3G21860.1	19277118
AT3G54650.1	CDY69121	AT3G21860.1	19277118
AT3G54650.1	CDX77280	AT3G60010.1	19277118
AT3G54650.1	CDX93698	AT3G60010.1	19277118
AT3G54650.1	CDX93699	AT3G60010.1	19277118
AT3G54650.1	CDY16470	AT3G60010.1	19277118
AT3G54650.1	CDY40610	AT3G60010.1	19277118
AT3G54650.1	CDY40611	AT3G60010.1	19277118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55831	Canola	mitochondrion	70.49	80.44
CDX78253	Canola	plastid	78.8	79.5
CDX73462	Canola	plastid	78.62	79.46
AT3G54650.1	Thale cress	plastid	81.1	77.4
Bra014802.1-P	Field mustard	plastid	89.93	65.01
VIT_07s0141g00330.t01	Wine grape	plastid	59.36	58.54
Os03t0633400-01	Rice	extracellular, vacuole	33.57	56.55
KRH71335	Soybean	nucleus	58.48	56.1
GSMUA_Achr4P28520_001	Banana	cytosol, mitochondrion	46.11	55.65
GSMUA_Achr4P21010_001	Banana	mitochondrion	47.88	55.42
Solyc09g065880.2.1	Tomato	nucleus	57.77	55.24
KRH67292	Soybean	cytosol	51.94	55.16
KRH32101	Soybean	nucleus	57.24	54.73
Solyc06g084060.2.1	Tomato	cytosol, nucleus, plastid	57.07	54.65
PGSC0003DMT400049672	Potato	nucleus	57.24	54.45
PGSC0003DMT400051898	Potato	cytosol	56.18	53.9
KRG95622	Soybean	nucleus, plastid	57.07	53.83
KRG90050	Soybean	cytosol	5.3	51.72
GSMUA_Achr2P12640_001	Banana	plastid	50.88	51.25
TraesCS5B01G382000.4	Wheat	plastid	45.94	49.52
Os12t0601000-00	Rice	plastid	48.76	49.29
TraesCS5A01G378400.1	Wheat	plastid	48.59	48.59
TraesCS5D01G388400.1	Wheat	plastid	48.06	48.48
Zm00001d030990_P001	Maize	cytosol	50.35	47.98
TraesCS5A01G058400.2	Wheat	plastid	50.0	47.32
EER93780	Sorghum	plastid	49.65	47.31
TraesCS5D01G069500.1	Wheat	plastid	49.29	46.81
TraesCS5B01G058300.1	Wheat	plastid	49.29	46.73
Zm00001d041414_P002	Maize	cytosol	48.94	46.17
Zm00001d033321_P001	Maize	plastid	46.29	45.41
OQU79521	Sorghum	plastid	48.59	44.5
HORVU5Hr1G093570.1	Barley	plastid	12.19	41.57
HORVU5Hr1G014320.7	Barley	plastid	49.65	41.14
HORVU5Hr1G093590.1	Barley	extracellular	41.34	39.93
Os03t0633100-00	Rice	plastid	11.84	32.52

Protein Annotations

EnsemblPlants:CDY64339	EnsemblPlantsGene:GSBRNA2T00041125001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44840	PANTHER:PTHR44840:SF1	PFAM:PF00646	ProteinID:CDY64339	ProteinID:CDY64339.1	SEG:seg
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EDF3C9	UniProt:A0A078JFG4	MapMan:19.2.2.8.1.4.6	:

Description

BnaA04g27740DBnaA04g27740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFG4]

Coordinates

chrLK034446:-:14159..17719

Molecular Weight (calculated)

61754.7 Da

IEP (calculated)

8.447

GRAVY (calculated)

-0.133

Length

566 amino acids

Sequence
(BLAST)

001: MQPQPQPHIS PTSAQAAISA ALKSQRLRKN RGSYSCGRCG QPKKGHVCHL PPPLDVPATP IAPEPLASVS ISAAASSSTR PPAPSRQPFT HLRRALSFDD
101: DEARDSRFHA AGLWEVLKRL PPSGLLMAAR VCRGWRETAG KMWKAAEELR IRVPERAQIG YVGSLLQKCP ALVRLSLKIE SEFDATTLAC IAFSCPNLEV
201: LEISTYGTAV NRISGDELSR FVSNKRGLRS LKMERCSNLG GVALSSTSLS TLWLADLHSL SKMVFNCPNL IEISLEFSLQ EDDSTDLVAM IDGLGRTCTR
301: LQNIHIASLK LAHTFVLALT AVNFRDLRMI SLVLGIDITD ASVAAISSTY TNLELLDLSG SSITDTGLGM ICDALPDTLS KLLVALCPNI TSSGIQFATA
401: QLPLLELMDC GMTVSDPTSD NPTSEEKSLT PQKTSGYNQK MFIKHKRLKK LSLWGGSSLD ALFLNCPELK DLNLNSCSNL QPESLVLQCP KLELVSASGC
501: QNLLIGAIRK QVSENFAAGE NHMPLKRLAD ASKRIQAPPS LYQETREDEN KKKRRKVERE VCTIIH

Best Arabidopsis Sequence Match ( AT3G54650.1 )
(BLAST)

001: MQPQPHISPN TATAAISAAL ESQRSRKNRG SYNCGRCGQP KKGHVCLLTA PPDIPTTPIA SEPVSCISAA ASSSRSTVLS LTAAPSSRQT FTHLRRALSF
101: DDVDARNSLD ESDLDAASMD LDLQLDTDIV QPGRFHAVGL WEVLKRLPPS SLLMAARVCK GWRETSRKMW KAAEELRIRV PERAQIGYIG SLLQKCPRLI
201: RLSLKIESDF DATTLACIAF SCPNLEVLEI TTSGAAVNRI SGDELSRFVA NKRGLTSLKM EGCSNLGGFS LSSSSLSTLW LSDLHSLSKM IFNCPNLTEI
301: SLEFSRQEDD STDLVTMVDG LGRTCTRLQN IHIASLKLSH TVVLSLTAVN FRYLRMLSLV LGINITDASV AAISSGYKNL ELLDLSGSSI TDTGLGMICD
401: VLPDTLSKLL VALCPNITSS GIQFATAQLP LLELMDCGMT VSDPNSDNPT FVENPSPHKT PGYNQKMFIK HKRLKKLSLW GCSSLDALFL NCPELMDLNL
501: NLCSNLHPES LVLQCPKLQL VYASGCQGLL TGAIRKQVSE NFSAGENHMP RKRLADASKR IQALPSLYQE TREDGIYAGK RRKLEKEMCT IIH

Arabidopsis Description

FBL17F-box/LRR-repeat protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q8W104]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.