Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67944 | nucleus |
| CDX68497 | |
| CDX69832 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX73462 | |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX78253 | |
| CDX79389 | nucleus |
| CDX83047 | |
| CDX83262 | |
| CDX87018 | |
| CDX87305 | nucleus |
| CDX88666 | |
| CDX89193 | |
| CDX90892 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDX97915 | |
| CDY02806 | |
| CDY03686 | |
| CDY03687 | |
| CDY05870 | |
| CDY11608 | endoplasmic reticulum |
| CDY12259 | |
| CDY12260 | |
| CDY14051 | |
| CDY18994 | |
| CDY19324 | |
| CDY20600 | |
| CDY20601 | |
| CDY20970 | |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY22369 | nucleus |
| CDY29570 | nucleus |
| CDY29942 | |
| CDY31173 | |
| CDY32714 | |
| CDY32995 | |
| CDY34673 | |
| CDY34854 | |
| CDY37592 | nucleus |
| CDY37936 | |
| CDY37939 | |
| CDY38664 | nucleus |
| CDY38800 | endoplasmic reticulum |
| CDY39984 | nucleus |
| CDY43865 | |
| CDY48212 | nucleus |
| CDY49278 | nucleus |
| CDY55173 | |
| CDY55831 | |
| CDY57741 | nucleus |
| CDY58566 | |
| CDY59943 | endoplasmic reticulum |
| CDY61993 | nucleus |
| CDY64339 | |
| CDY66197 | |
| CDY66787 | |
| CDY67142 | endoplasmic reticulum |
| CDY67496 | |
| CDY69708 | nucleus |
| CDY70684 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19160 | Canola | nucleus | 72.95 | 73.25 |
| CDX79470 | Canola | nucleus | 72.54 | 71.37 |
| CDX84726 | Canola | nucleus | 69.67 | 68.83 |
| CDY12181 | Canola | nucleus | 53.28 | 54.39 |
| CDY59640 | Canola | nucleus | 27.87 | 53.97 |
| AT2G32710.1 | Thale cress | nucleus | 56.15 | 47.4 |
| HORVU3Hr1G064490.1 | Barley | nucleus | 13.93 | 47.22 |
| Solyc09g091780.2.1 | Tomato | nucleus | 40.16 | 46.67 |
| PGSC0003DMT400076291 | Potato | nucleus | 39.34 | 45.93 |
| PGSC0003DMT400019919 | Potato | nucleus | 41.39 | 43.16 |
| Solyc12g098310.1.1 | Tomato | nucleus | 40.98 | 43.1 |
| CDX86277 | Canola | cytosol, mitochondrion, plastid | 18.85 | 42.59 |
| EER91497 | Sorghum | cytosol | 33.2 | 42.41 |
| Os10t0471700-02 | Rice | nucleus | 33.61 | 42.27 |
| CDY00044 | Canola | nucleus | 32.79 | 41.67 |
| TraesCS1A01G151400.1 | Wheat | nucleus | 34.43 | 41.38 |
| KRG92238 | Soybean | nucleus | 37.7 | 41.07 |
| TraesCS1B01G168900.1 | Wheat | cytosol, nucleus, plastid | 34.02 | 40.89 |
| CDY19935 | Canola | nucleus | 32.79 | 40.82 |
| Zm00001d014046_P001 | Maize | nucleus | 31.97 | 40.62 |
| GSMUA_Achr8P12510_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.15 | 39.58 |
| GSMUA_Achr5P20430_001 | Banana | nucleus | 30.74 | 39.47 |
| TraesCS1D01G148400.2 | Wheat | cytosol, nucleus, plastid | 32.79 | 39.41 |
| CDY71628 | Canola | nucleus | 31.97 | 39.2 |
| GSMUA_Achr11P... | Banana | nucleus | 31.97 | 39.0 |
| CDX93038 | Canola | nucleus | 31.56 | 38.69 |
| GSMUA_Achr1P00900_001 | Banana | nucleus | 29.92 | 38.62 |
| CDX85366 | Canola | nucleus | 32.38 | 38.16 |
| CDX86276 | Canola | nucleus | 31.97 | 37.68 |
| GSMUA_Achr1P20410_001 | Banana | nucleus | 35.25 | 37.55 |
| VIT_05s0029g00040.t01 | Wine grape | nucleus | 39.75 | 37.45 |
| Zm00001d048363_P001 | Maize | nucleus | 32.38 | 36.74 |
| GSMUA_Achr11P... | Banana | nucleus | 28.28 | 36.7 |
| HORVU5Hr1G031690.1 | Barley | extracellular | 16.39 | 36.36 |
| Os03t0137800-01 | Rice | mitochondrion, nucleus, plastid | 32.79 | 36.2 |
| Zm00001d027585_P001 | Maize | nucleus | 31.56 | 36.15 |
| EER95545 | Sorghum | nucleus | 31.56 | 36.15 |
| TraesCS5A01G506500.1 | Wheat | nucleus | 30.74 | 35.89 |
| HORVU3Hr1G064580.1 | Barley | nucleus | 19.26 | 35.88 |
| GSMUA_Achr5P12920_001 | Banana | nucleus | 31.97 | 35.29 |
| GSMUA_Achr2P11790_001 | Banana | nucleus | 28.69 | 34.48 |
| GSMUA_Achr4P26490_001 | Banana | nucleus | 29.92 | 33.49 |
| GSMUA_Achr6P36640_001 | Banana | nucleus | 33.2 | 32.93 |
| HORVU1Hr1G040110.3 | Barley | nucleus, plastid | 25.0 | 30.81 |
| TraesCS4D01G332500.1 | Wheat | nucleus | 26.64 | 29.68 |
| Zm00001d032732_P002 | Maize | mitochondrion | 22.13 | 27.84 |
| GSMUA_Achr5P21770_001 | Banana | nucleus | 30.74 | 25.68 |
| HORVU4Hr1G080410.1 | Barley | nucleus | 31.56 | 20.64 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078GGN4 | UniProt:A0A078GGN4 | InterPro:CDI | EnsemblPlants:CDY23793 |
| ProteinID:CDY23793 | ProteinID:CDY23793.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0071901 | EnsemblPlantsGene:GSBRNA2T00024155001 |
| PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF41 | UniParc:UPI0004EDDC5B | SEG:seg |
Description
BnaC04g43290DBnaC04g43290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGN4]
Coordinates
chrLK032148:-:601534..603127
Molecular Weight (calculated)
26720.4 Da
IEP (calculated)
10.284
GRAVY (calculated)
-1.018
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSVGKMGKY IKKSKLDGES LPLMDVSPSP LGVLTRAKSL ALQRRLQKPS PSSSSPSKQK TTTDCVGGGG GSYLQLRSRR LQKKPPIVVI RRRKKQRRVR
101: NPSPQNVDSG RGSGGGDGSR SDSVGESGVC GKAKDFNGEI NVDELQGSES FNRTTRESTP CSLMRKPESP GSSTKLNNGV SDNSNEREES LSGSRGHLPT
201: TPEMDEFFSG AEEEQQKIFI DKYNFDPVNE QPLPGRFEWK KVDD
101: NPSPQNVDSG RGSGGGDGSR SDSVGESGVC GKAKDFNGEI NVDELQGSES FNRTTRESTP CSLMRKPESP GSSTKLNNGV SDNSNEREES LSGSRGHLPT
201: TPEMDEFFSG AEEEQQKIFI DKYNFDPVNE QPLPGRFEWK KVDD
001: MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
101: SYLQLRSRRL QKKPPIVVIR STKRRKQQRR NETCGRNPNP RSNLDSIRGD GSRSDSVSES VVFGKDKDLI SEINKDPTFG QNFFDLEEEH TQSFNRTTRE
201: STPCSLIRRP EIMTTPGSST KLNICVSESN QREDSLSRSH RRRPTTPEMD EFFSGAEEEQ QKQFIEKYNF DPVNEQPLPG RFEWTKVDD
Arabidopsis Description
KRP4Cyclin-dependent kinase inhibitor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.