Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69832 | Canola | nucleus | 95.22 | 93.94 |
| AT5G10440.1 | Thale cress | nucleus | 76.79 | 75.5 |
| CDY54717 | Canola | nucleus | 54.95 | 60.53 |
| CDY08795 | Canola | nucleus | 63.48 | 60.39 |
| CDX81286 | Canola | nucleus | 54.61 | 60.15 |
| CDY33959 | Canola | nucleus | 57.34 | 55.08 |
| CDY14561 | Canola | cytosol | 60.75 | 54.77 |
| CDY37828 | Canola | nucleus | 57.34 | 54.37 |
| CDY13755 | Canola | nucleus | 43.0 | 43.15 |
| KRH69654 | Soybean | cytosol | 34.47 | 41.56 |
| PGSC0003DMT400037827 | Potato | nucleus | 47.44 | 40.41 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 33.79 | 39.76 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.42 | 39.53 |
| Solyc11g010460.1.1 | Tomato | cytosol | 41.98 | 39.42 |
| KRG99448 | Soybean | nucleus | 46.76 | 38.27 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 46.08 | 38.24 |
| KRH74510 | Soybean | nucleus | 47.1 | 38.23 |
| KRH45568 | Soybean | nucleus | 45.05 | 38.15 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 45.05 | 38.04 |
| CDX89480 | Canola | nucleus | 45.73 | 37.75 |
| CDY25602 | Canola | nucleus | 45.73 | 37.64 |
| CDX76917 | Canola | nucleus | 45.05 | 37.29 |
| GSMUA_Achr10P... | Banana | nucleus | 40.61 | 37.07 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 43.69 | 36.57 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 42.32 | 35.73 |
| Zm00001d018128_P001 | Maize | nucleus | 43.0 | 35.49 |
| GSMUA_Achr10P... | Banana | nucleus | 41.3 | 35.17 |
| Zm00001d052185_P001 | Maize | nucleus | 43.0 | 35.0 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 42.66 | 34.92 |
| TraesCS6B01G345300.1 | Wheat | plastid | 41.98 | 34.84 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 41.3 | 34.67 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 40.96 | 34.19 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 39.93 | 33.81 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 41.3 | 33.8 |
| PGSC0003DMT400041637 | Potato | nucleus | 44.71 | 33.25 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 40.61 | 32.96 |
| EES07560 | Sorghum | nucleus | 40.27 | 32.96 |
| CDY11608 | Canola | nucleus | 33.11 | 30.6 |
| CDY38800 | Canola | nucleus | 32.08 | 29.47 |
| KXG19603 | Sorghum | nucleus | 34.47 | 29.02 |
| CDY67142 | Canola | nucleus | 32.76 | 28.32 |
| CDY59943 | Canola | nucleus | 32.76 | 26.59 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 15.36 | 26.16 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 22.18 | 25.79 |
| CDY21951 | Canola | nucleus | 25.6 | 24.83 |
| CDY22116 | Canola | nucleus | 25.26 | 24.83 |
| CDY17742 | Canola | nucleus | 30.03 | 24.79 |
| CDY30607 | Canola | nucleus | 29.35 | 24.36 |
| CDX90892 | Canola | nucleus | 12.63 | 24.34 |
| CDX83112 | Canola | nucleus | 29.01 | 24.15 |
| CDX68573 | Canola | nucleus | 28.67 | 23.86 |
| CDY02095 | Canola | nucleus | 26.28 | 23.48 |
| CDY23022 | Canola | nucleus | 25.6 | 22.8 |
| CDY12825 | Canola | nucleus | 26.62 | 21.79 |
| CDY01425 | Canola | nucleus | 25.6 | 21.19 |
| CDX76265 | Canola | nucleus | 25.6 | 20.55 |
| CDY57741 | Canola | nucleus | 25.26 | 20.27 |
| CDY49278 | Canola | nucleus | 25.26 | 20.05 |
| CDY69708 | Canola | nucleus | 25.26 | 19.79 |
| CDX72453 | Canola | nucleus | 24.23 | 19.72 |
| CDX75405 | Canola | nucleus | 24.91 | 19.57 |
| CDY29570 | Canola | nucleus | 22.18 | 19.46 |
| CDX72643 | Canola | nucleus | 22.53 | 19.41 |
| CDY40332 | Canola | cytosol | 21.84 | 18.82 |
| CDY10467 | Canola | cytosol | 21.16 | 18.29 |
| CDY55121 | Canola | cytosol | 20.82 | 17.78 |
| CDX80803 | Canola | cytosol | 21.5 | 13.97 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078E8G3 | EnsemblPlants:CDX97009 | ProteinID:CDX97009 | ProteinID:CDX97009.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00103966001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE1693 | SEG:seg | : | : | : | : |
Description
BnaC09g46160D
Coordinates
chrLK031897:-:179610..181269
Molecular Weight (calculated)
33185.7 Da
IEP (calculated)
5.233
GRAVY (calculated)
-0.137
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEIERSSFD DENSITSYPT SILQMGFSSE EDEETIREMI HKERQHSPRD DYLERLRSGD LDLNVRNQAL DWIWKACEEL QFGPVCICLA VNYLDRFLSV
101: HDLPSGKAWA VQLLAVSCLS LAVKIEDIKV PELIIHLQVG DPWFVFEAKY VQRMELLVLK VLKWRLRAVT PCSYVRYFLS KIYGYDQEPS SRVISRSFQV
201: IASTTKGIDF LEFRASEIGA AVALSVSGEL HTLQFDKFSL CPHLDKESVK KIGEMIERNG STSCPQTPPS NNAVLQFKTL STSSVSSSLT SLS
101: HDLPSGKAWA VQLLAVSCLS LAVKIEDIKV PELIIHLQVG DPWFVFEAKY VQRMELLVLK VLKWRLRAVT PCSYVRYFLS KIYGYDQEPS SRVISRSFQV
201: IASTTKGIDF LEFRASEIGA AVALSVSGEL HTLQFDKFSL CPHLDKESVK KIGEMIERNG STSCPQTPPS NNAVLQFKTL STSSVSSSLT SLS
001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS
Arabidopsis Description
CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.