Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
CDX68497 | |
CDX69600 | |
CDX69832 | nucleus |
CDX70546 | |
CDX72643 | nucleus |
CDX76164 | |
CDX78564 | |
CDX83047 | |
CDX86537 | |
CDX87018 | |
CDX90892 | nucleus |
CDX96319 | |
CDX97009 | nucleus |
CDY03686 | |
CDY03687 | |
CDY05870 | |
CDY10170 | |
CDY11608 | endoplasmic reticulum |
CDY13189 | |
CDY14051 | |
CDY15560 | |
CDY21951 | nucleus |
CDY22116 | nucleus |
CDY29570 | nucleus |
CDY37936 | |
CDY37939 | |
CDY38800 | endoplasmic reticulum |
CDY47713 | |
CDY55173 | |
CDY58407 | |
CDY59943 | endoplasmic reticulum |
CDY66197 | |
CDY66787 | |
CDY67142 | endoplasmic reticulum |
CDY67496 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX93038 | Canola | nucleus | 92.46 | 92.46 |
AT3G24810.1 | Thale cress | nucleus | 52.76 | 55.56 |
CDY00044 | Canola | nucleus | 41.21 | 42.71 |
CDX86277 | Canola | cytosol, mitochondrion, plastid | 22.61 | 41.67 |
KRG99786 | Soybean | nucleus | 42.21 | 40.98 |
CDY19935 | Canola | nucleus | 40.2 | 40.82 |
PGSC0003DMT400045507 | Potato | nucleus | 39.2 | 39.39 |
KRH46746 | Soybean | nucleus | 39.7 | 39.3 |
CDX85366 | Canola | nucleus | 40.7 | 39.13 |
Solyc09g061280.2.1 | Tomato | nucleus | 36.68 | 38.83 |
CDX86276 | Canola | nucleus | 40.2 | 38.65 |
CDY59640 | Canola | nucleus | 21.61 | 34.13 |
CDX84726 | Canola | nucleus | 42.21 | 34.01 |
VIT_07s0005g06340.t01 | Wine grape | nucleus | 36.68 | 33.49 |
CDX79470 | Canola | nucleus | 40.7 | 32.66 |
CDY12181 | Canola | nucleus | 38.69 | 32.22 |
CDY19160 | Canola | nucleus | 39.2 | 32.1 |
CDY23793 | Canola | nucleus | 39.2 | 31.97 |
Protein Annotations
MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078JVL0 | UniProt:A0A078JVL0 | InterPro:CDI | EnsemblPlants:CDY71628 |
ProteinID:CDY71628 | ProteinID:CDY71628.1 | GO:GO:0003674 | GO:GO:0004860 | GO:GO:0004861 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006469 | GO:GO:0007049 |
GO:GO:0007050 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 |
GO:GO:0071901 | EnsemblPlantsGene:GSBRNA2T00017753001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF23 |
UniParc:UPI0001B31340 | SEG:seg | : | : | : | : |
Description
BnaC03g73980DBnaC03g73980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JVL0]
Coordinates
chrLK046699:-:977..1951
Molecular Weight (calculated)
22578.5 Da
IEP (calculated)
9.935
GRAVY (calculated)
-0.797
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRYIKKSKI AGGALSAKDI SHQTASGFRT RAAKNLALQR LRSHSTPPFV DADSFRYLQL RSRRLVKLPL LADTRKQQQR QLANSVGKRQ TTNPRANPVL
101: SSEPTNLEED RGSNLVKFES GCSLGEKGLE FESGDRETTP CSLRRDSEEA TQSVPSHEIE EFFAFAEQQQ QRFFTEKYNF DIVSENPLPG RYEWIKVVP
101: SSEPTNLEED RGSNLVKFES GCSLGEKGLE FESGDRETTP CSLRRDSEEA TQSVPSHEIE EFFAFAEQQQ QRFFTEKYNF DIVSENPLPG RYEWIKVVP
001: MGKYIKKSKV AGAVSVKDKS HPPALGFRTR AAAAKNLALH RLRSHSDEAD SFNYLQLRSR RLVKLPLLTN TRKQQKQQLI PSVNQCQTKN PRASSGPAKK
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP
101: LEPDTTTEEA CGDNERISRS DCNFGDKGFD LESENRSMIS DSKSIQSEIE DFFASAEQQQ QRFFIQKYNF DIVSDNPLPG RYEWVKVMP
Arabidopsis Description
KRP5Cyclin-dependent kinase inhibitor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRY0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.