CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX73827
CDX76164
CDX79470
CDX83047
CDX84726
CDX87018
CDY00765
CDY05870
CDY08440
CDY12181
CDY13189
CDY19160
CDY23793
CDY42141
CDY50559
CDY52391
CDY52614
CDY59640
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	CDX79470	AT2G32710.1	20706207
AT4G03270.1	CDX84726	AT2G32710.1	20706207
AT4G03270.1	CDY12181	AT2G32710.1	20706207
AT4G03270.1	CDY19160	AT2G32710.1	20706207
AT4G03270.1	CDY23793	AT2G32710.1	20706207
AT4G03270.1	CDY59640	AT2G32710.1	20706207
AT4G03270.1	CDX73827	AT3G12280.1	22921914
AT4G03270.1	CDY00765	AT3G12280.1	22921914
AT4G03270.1	CDY08440	AT3G12280.1	22921914
AT4G03270.1	CDY42141	AT3G12280.1	22921914
AT4G03270.1	CDY50559	AT3G12280.1	22921914
AT4G03270.1	CDY52391	AT3G12280.1	22921914
AT4G03270.1	CDY52614	AT3G12280.1	22921914
AT4G03270.1	CDX68497	AT3G48750.1	20706207
AT4G03270.1	CDX83047	AT3G48750.1	20706207
AT4G03270.1	CDX87018	AT3G48750.1	20706207
AT4G03270.1	CDY05870	AT3G48750.1	20706207
AT4G03270.1	CDY66197	AT3G48750.1	20706207
AT4G03270.1	CDY67496	AT3G48750.1	20706207
AT4G03270.1	CDX76164	AT3G54180.1	22921914
AT4G03270.1	CDY13189	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22116	Canola	nucleus	94.37	95.64
Bra034198.1-P	Field mustard	nucleus	94.04	95.3
AT4G03270.1	Thale cress	nucleus	82.45	82.45
CDX90892	Canola	nucleus	35.76	71.05
VIT_12s0134g00500.t01	Wine grape	nucleus	44.7	45.92
PGSC0003DMT400039033	Potato	nucleus	45.7	44.37
Solyc07g054950.1.1	Tomato	nucleus	44.37	43.23
KRH22479	Soybean	cytosol	43.38	41.46
KRH26876	Soybean	nucleus	43.05	41.27
GSMUA_Achr6P24270_001	Banana	nucleus	40.73	40.46
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	33.44	40.24
KRH25470	Soybean	nucleus	42.05	39.2
KRH56054	Soybean	cytosol, nucleus, plasma membrane	42.05	38.6
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	38.08	38.33
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	30.13	36.26
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	27.48	34.3
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	33.77	33.22
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	34.11	32.91
EER99528	Sorghum	cytosol	34.11	32.8
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	33.44	32.58
Os07t0556000-01	Rice	cytosol	33.77	31.88
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	35.1	31.09
GSMUA_Achr9P12120_001	Banana	nucleus	38.74	27.73
CDY54717	Canola	nucleus	23.51	26.69
CDX81286	Canola	nucleus	22.85	25.94
CDY11608	Canola	nucleus	27.15	25.87
CDY38800	Canola	nucleus	27.15	25.71
CDX97009	Canola	nucleus	24.83	25.6
CDX69832	Canola	nucleus	25.17	25.59
HORVU7Hr1G117300.3	Barley	cytosol	13.91	25.45
CDY13755	Canola	nucleus	24.5	25.34
CDY67142	Canola	nucleus	27.81	24.78
CDY37828	Canola	nucleus	24.83	24.27
CDY33959	Canola	nucleus	24.5	24.26
CDX89480	Canola	nucleus	27.48	23.38
CDY08795	Canola	nucleus	23.84	23.38
CDY25602	Canola	nucleus	27.15	23.03
CDY59943	Canola	nucleus	27.48	22.99
CDY14561	Canola	cytosol	23.84	22.15
CDX76917	Canola	nucleus	25.17	21.47
CDX83112	Canola	nucleus	22.85	19.6
CDY30607	Canola	nucleus	22.85	19.55
CDY02095	Canola	nucleus	21.19	19.51
CDY23022	Canola	nucleus	21.19	19.45
CDY17742	Canola	nucleus	22.85	19.44
CDX68573	Canola	nucleus	22.52	19.32
CDY12825	Canola	nucleus	22.85	19.27
CDY01425	Canola	nucleus	22.19	18.93
CDX72453	Canola	nucleus	22.52	18.89
CDY57741	Canola	nucleus	22.52	18.63
CDX76265	Canola	nucleus	22.52	18.63
CDY30606	Canola	cytosol, nucleus, plastid	10.6	18.6
CDX75405	Canola	nucleus	22.52	18.23
CDY69708	Canola	nucleus	22.52	18.18
CDY49278	Canola	nucleus	21.85	17.89
CDY29570	Canola	nucleus	18.54	16.77
CDX72643	Canola	nucleus	18.87	16.76
CDY10467	Canola	cytosol	18.21	16.22
CDY55121	Canola	cytosol	18.21	16.04
CDY40332	Canola	cytosol	17.55	15.59
CDX80803	Canola	cytosol	18.54	12.42

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078G979	UniProt:A0A078G979	EnsemblPlants:CDY21951	ProteinID:CDY21951
ProteinID:CDY21951.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00018281001	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0004EB3F3F
SEG:seg	:	:	:	:	:

Description

BnaC09g00570DBnaC09g00570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G979]

Coordinates

chrLK032126:-:284577..286284

Molecular Weight (calculated)

34466.2 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.268

Length

302 amino acids

Sequence
(BLAST)

001: MEFHLEHPLS HSPSIHNNKN ETNFNDDTLP PHSLFLVEPQ HMPSPHYFHT LKSSASLLSN RNHAISSIIK YSRKLDDPSL TYLAVNYLDR FLSSEDMMPQ
101: SKPWILKLIS LSCVSLSAKM RKPDISVCDL PVEGEMFDAQ MIERMENVIL GALKWRMRSV TPFSFLSFFL SLLFELEEDH SVLKHSLKAQ ATDLTFNLQH
201: DIKFLEFKPS VVAAAALLFA SSELCPQQFP CFSNRICQCT YVNKDELMEC YKAMQERDVV EDNEGSNDTA INVLDQQFSS CEESAITASS PKRRKTITTS
301: RC

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.