Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55121 | Canola | cytosol | 65.41 | 86.01 |
| CDY10467 | Canola | cytosol | 56.54 | 75.22 |
| CDY40332 | Canola | cytosol | 56.54 | 75.0 |
| AT5G02110.1 | Thale cress | cytosol | 46.78 | 61.88 |
| KRH65892 | Soybean | cytosol | 22.62 | 35.42 |
| KRH75669 | Soybean | cytosol | 22.62 | 35.29 |
| VIT_08s0007g00790.t01 | Wine grape | nucleus | 24.39 | 32.54 |
| KRH54622 | Soybean | cytosol | 10.86 | 32.03 |
| KRH54628 | Soybean | cytosol | 10.86 | 32.03 |
| GSMUA_Achr10P... | Banana | cytosol | 17.07 | 30.43 |
| TraesCS4A01G177400.1 | Wheat | cytosol | 19.73 | 26.73 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 16.19 | 26.55 |
| TraesCS4B01G140400.1 | Wheat | cytosol, nucleus, plastid | 19.29 | 26.2 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 19.07 | 25.52 |
| Os11t0706801-00 | Rice | nucleus | 17.52 | 24.69 |
| CDY11608 | Canola | nucleus | 17.29 | 24.61 |
| CDY38800 | Canola | nucleus | 16.85 | 23.82 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 8.87 | 23.26 |
| CDY13755 | Canola | nucleus | 14.86 | 22.95 |
| CDY67142 | Canola | nucleus | 17.07 | 22.71 |
| CDY17742 | Canola | nucleus | 17.74 | 22.54 |
| CDY02095 | Canola | nucleus | 16.19 | 22.26 |
| CDY54717 | Canola | nucleus | 13.08 | 22.18 |
| CDY30607 | Canola | nucleus | 17.29 | 22.1 |
| CDY23022 | Canola | nucleus | 15.96 | 21.88 |
| CDY01425 | Canola | nucleus | 17.07 | 21.75 |
| CDX83112 | Canola | nucleus | 16.85 | 21.59 |
| CDX97009 | Canola | nucleus | 13.97 | 21.5 |
| CDX81286 | Canola | nucleus | 12.64 | 21.43 |
| CDY08795 | Canola | nucleus | 14.41 | 21.1 |
| CDX68573 | Canola | nucleus | 16.41 | 21.02 |
| CDY12825 | Canola | nucleus | 16.63 | 20.95 |
| CDY59943 | Canola | nucleus | 16.41 | 20.5 |
| CDX69832 | Canola | nucleus | 13.3 | 20.2 |
| CDX76917 | Canola | nucleus | 15.74 | 20.06 |
| CDY14561 | Canola | cytosol | 14.41 | 20.0 |
| CDY25602 | Canola | nucleus | 15.74 | 19.94 |
| Zm00001d048594_P001 | Maize | cytosol | 18.63 | 19.76 |
| CDX76265 | Canola | nucleus | 15.96 | 19.73 |
| CDX89480 | Canola | nucleus | 15.52 | 19.72 |
| OQU84124 | Sorghum | nucleus | 18.63 | 19.67 |
| CDY57741 | Canola | nucleus | 15.52 | 19.18 |
| CDX72453 | Canola | nucleus | 15.3 | 19.17 |
| CDY22116 | Canola | nucleus | 12.42 | 18.79 |
| CDY49278 | Canola | nucleus | 15.3 | 18.7 |
| CDY33959 | Canola | nucleus | 12.64 | 18.69 |
| CDY21951 | Canola | nucleus | 12.42 | 18.54 |
| CDX90892 | Canola | nucleus | 6.21 | 18.42 |
| CDX75405 | Canola | nucleus | 15.08 | 18.23 |
| CDY69708 | Canola | nucleus | 15.08 | 18.18 |
| CDY37828 | Canola | nucleus | 12.42 | 18.12 |
| CDY29570 | Canola | nucleus | 10.64 | 14.37 |
| CDX72643 | Canola | nucleus | 10.64 | 14.12 |
Protein Annotations
| EnsemblPlants:CDX80803 | EnsemblPlantsGene:GSBRNA2T00134187001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF215 | PFAM:PF00134 | ProteinID:CDX80803 | ProteinID:CDX80803.1 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF103511 | SUPFAM:SSF47954 | UniParc:UPI0004EDE7DE | MapMan:1.1.1.3.7.2 | MapMan:13.1.1.1.4 |
Description
BnaC03g00570D
Coordinates
chrLK031823:+:294516..297156
Molecular Weight (calculated)
51206.2 Da
IEP (calculated)
6.248
GRAVY (calculated)
-0.075
Length
451 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLLCDESW LSDPSALEPL SNFRLNVHDD HMEMSPAMDA STIDEAISID LEKESCFSYH GHKFIESLVS KKLTDARFQT VQWLIQTRSR LNLSFETLFS
101: AANCFDRFVN VISCDEWSKW MVELVAVTSL SVASKFNDVT SPSLQELQME GLTHMFHHKT VLEMELILLK ALEWRVNSVT SLSFSQILMT KVRIVGGDIM
201: MNRITEHLLD DLCDLKMLEY APSVVAVAAM WTVLEEKAAL EENFGIIMNL FREEHKENIA KCVNVMKFRN VEKGWGRKVT ELKSLVSVLQ RGDVMNMNDV
301: YHGGDLSAIF QILRSEEINK KRDRDYYEDK IRKENLLQKK MSSSPLASSL FPSSLSTLSA HNHGRSRSFC VSRKEQCLRV RAAKLPEGMI VPKVQPKSQP
401: AFLGFTQTAE IWNSRACMIG LIGTFIVELI LNKGILELIG VEIGKGLDLP L
101: AANCFDRFVN VISCDEWSKW MVELVAVTSL SVASKFNDVT SPSLQELQME GLTHMFHHKT VLEMELILLK ALEWRVNSVT SLSFSQILMT KVRIVGGDIM
201: MNRITEHLLD DLCDLKMLEY APSVVAVAAM WTVLEEKAAL EENFGIIMNL FREEHKENIA KCVNVMKFRN VEKGWGRKVT ELKSLVSVLQ RGDVMNMNDV
301: YHGGDLSAIF QILRSEEINK KRDRDYYEDK IRKENLLQKK MSSSPLASSL FPSSLSTLSA HNHGRSRSFC VSRKEQCLRV RAAKLPEGMI VPKVQPKSQP
401: AFLGFTQTAE IWNSRACMIG LIGTFIVELI LNKGILELIG VEIGKGLDLP L
001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I
Arabidopsis Description
CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.