CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93180
EES04403
KXG33680
KXG36804
KXG40187
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	KXG40187	AT2G27960.1	20706207
AT5G02110.1	KXG40187	AT2G27970.1	20706207
AT5G02110.1	EES04403	AT3G48750.1	20706207
AT5G02110.1	KXG40336	AT3G48750.1	20706207
AT5G02110.1	EER93180	AT5G02220.1	20706207
AT5G02110.1	KXG33680	AT5G02220.1	20706207
AT5G02110.1	KXG36804	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048594_P001	Maize	cytosol	66.04	66.35
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	44.26	56.93
TraesCS4A01G177400.1	Wheat	cytosol	44.26	56.76
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	44.5	56.38
Os11t0706801-00	Rice	nucleus	40.52	54.06
GSMUA_Achr10P...	Banana	cytosol	26.93	45.45
GSMUA_Achr6P34040_001	Banana	nucleus	28.1	43.64
KRH65892	Soybean	cytosol	22.25	32.99
KRH75669	Soybean	cytosol	22.01	32.53
KRH54628	Soybean	cytosol	11.48	32.03
KRH54622	Soybean	cytosol	11.48	32.03
VIT_08s0007g00790.t01	Wine grape	nucleus	23.65	29.88
EER97558	Sorghum	nucleus	20.61	25.51
CDY10467	Canola	cytosol	20.14	25.37
CDY55121	Canola	cytosol	20.37	25.36
CDY40332	Canola	cytosol	20.14	25.29
Bra009612.1-P	Field mustard	cytosol	20.14	25.29
Bra005708.1-P	Field mustard	cytosol	20.14	25.07
KXG19603	Sorghum	nucleus	19.2	23.56
AT5G02110.1	Thale cress	cytosol	18.74	23.46
EES07560	Sorghum	nucleus	19.2	22.91
OQU92473	Sorghum	nucleus	18.27	22.54
OQU89443	Sorghum	nucleus	17.56	22.52
EES14027	Sorghum	nucleus	19.67	22.52
EER99528	Sorghum	cytosol	16.16	21.97
EER96886	Sorghum	nucleus	18.03	20.37
EES17294	Sorghum	nucleus	16.16	19.01
EER96424	Sorghum	cytosol	16.86	18.85
EER91226	Sorghum	nucleus	16.16	18.65
CDX80803	Canola	cytosol	19.67	18.63
EER92677	Sorghum	nucleus	15.46	18.59

Protein Annotations

EnsemblPlants:OQU84124	EnsemblPlantsGene:SORBI_3005G231400	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF215	PFAM:PF00134	PFAM:PF02984	ProteinID:OQU84124	ProteinID:OQU84124.1	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000B424F5F	UniProt:A0A1Z5RK74	MapMan:13.1.1.1.4	:

Description

hypothetical protein

Coordinates

chr5:-:71744060..71746938

Molecular Weight (calculated)

47550.3 Da

IEP (calculated)

5.575

GRAVY (calculated)

-0.284

Length

427 amino acids

Sequence
(BLAST)

001: MHMEDDDETS SQMLNNNSIA SLLYCDEDPL NSSTTPPRPP PPLGQQQQQQ AASLVLATTV GDVEEEDHLK ELLVDHMARQ RFYAPTCRGG YLEHLLLPPP
101: QQQGSTPPEA AIIPGSGTVS AARSRGVHYI IYAFGRLGLT VTTVFNAVNY LDRFLSINCH LCWEAWMVEL VSVACLSIAC KLDEVNIPSL HHLQMEEVMS
201: NSFLPATIQD MELTLLKALQ WRLACVTPYS FLQLLLPLLT PHTTTTTTPS RCIRLLIRSL TEPSFIRFDP SVVASSALGC VVALEDHQTY GYISRLIRPH
301: CPATAMDEAD DGDECFRMME TLYASCCSES DWNWNTHHHH HHHHQPQLYS SDDERLRSPV SVIRRPLELE TAGGGGGRLI NSRMSAVSRR RLFGSSASET
401: QGSTQLQDDG GNTHVRDEDI SLSHTHN

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.