CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40187
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	KXG40187	AT2G27960.1	20706207
AT4G37630.1	KXG40187	AT2G27970.1	20706207
AT4G37630.1	EES04403	AT3G48750.1	20706207
AT4G37630.1	KXG40336	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	79.44	79.89
Zm00001d003439_P001	Maize	plastid	27.32	76.38
Zm00001d028092_P001	Maize	cytosol	55.49	72.43
TraesCS4B01G257900.1	Wheat	cytosol	55.21	59.39
TraesCS4A01G046900.1	Wheat	nucleus	58.59	59.26
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	57.18	59.01
Os03t0203800-01	Rice	nucleus	56.06	57.68
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	16.06	47.5
GSMUA_Achr4P07110_001	Banana	nucleus	34.93	38.75
EES17294	Sorghum	nucleus	36.34	35.54
GSMUA_Achr6P16910_001	Banana	cytosol	27.32	34.89
GSMUA_Achr6P07740_001	Banana	nucleus	29.3	32.7
EER91226	Sorghum	nucleus	33.8	32.43
GSMUA_Achr10P...	Banana	nucleus	25.92	32.17
VIT_18s0001g09160.t01	Wine grape	nucleus	26.76	29.97
KRH52092	Soybean	nucleus	25.35	28.66
KRH77118	Soybean	nucleus	25.92	27.71
KRH61407	Soybean	nucleus	24.23	27.56
KRH28363	Soybean	nucleus	25.07	26.89
VIT_07s0129g00200.t01	Wine grape	nucleus	24.51	26.36
OQU89443	Sorghum	nucleus	23.94	25.53
OQU92473	Sorghum	nucleus	24.79	25.43
AT4G37630.1	Thale cress	nucleus	22.82	25.08
EER97558	Sorghum	nucleus	23.94	24.64
EER96886	Sorghum	nucleus	26.2	24.6
CDY29570	Canola	nucleus	23.1	24.55
Bra017840.1-P	Field mustard	nucleus	23.38	24.34
CDX72643	Canola	nucleus	23.1	24.12
EES14027	Sorghum	nucleus	25.07	23.86
KXG19603	Sorghum	nucleus	23.1	23.56
EES07560	Sorghum	nucleus	23.66	23.46
EER99528	Sorghum	cytosol	18.87	21.34
EER96424	Sorghum	cytosol	21.41	19.9
OQU84124	Sorghum	nucleus	18.59	15.46

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:C5WTS4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	EnsemblPlants:EER92677	ProteinID:EER92677	ProteinID:EER92677.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF273	SMART:SM00385	EnsemblPlantsGene:SORBI_3001G464800	SUPFAM:SSF47954	UniParc:UPI0001A828E1	RefSeq:XP_002465679.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:73870741..73873123

Molecular Weight (calculated)

37954.5 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.134

Length

355 amino acids

Sequence
(BLAST)

001: MGDAAAAAAS TSAPDTPTSI LICREDGGGF LADADDDGDG ADLVVARDER LLVVDQDEEY VALLLSEESA SGSGGAPAEE IEEWMKAARS GCVRWIIKTT
101: ATFRCGGKTA YVAVTYLDRF LAQRRVNRRQ EWALQLLAVA CLSLAIKMEE QHAPRLSEFR VDAYEFDSAS ILRMELFVLS TLEWRMNAVT PFSYISCFAA
201: RFREDERRAI LLRAVECVFA AIKATSSVEY QPSTMAVASI LVARGRNLDA LKAILGSSCP HIDTEHVYSC YSAMVQDDDK SPTRSTSTGV ASSGVSVAAH
301: AGSGSGSPSP GASVSVGANN AAGTATPDNH SNKRRREGVA KNARIQMGAR FDSSD

Best Arabidopsis Sequence Match ( AT4G37630.2 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL
201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NV

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.