Factsheet for VIT_07s0129g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0061g00810.t01
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT4G37630.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT4G37630.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g09160.t01	Wine grape	nucleus	47.58	49.53
KRH28363	Soybean	nucleus	48.18	48.04
KRH77118	Soybean	nucleus	47.88	47.59
GSMUA_Achr6P07740_001	Banana	nucleus	39.39	40.88
GSMUA_Achr10P...	Banana	nucleus	34.85	40.21
GSMUA_Achr6P16910_001	Banana	cytosol	32.42	38.49
AT4G37630.1	Thale cress	nucleus	35.76	36.53
CDX72643	Canola	nucleus	37.58	36.47
CDY29570	Canola	nucleus	36.36	35.93
Bra017840.1-P	Field mustard	nucleus	36.97	35.78
VIT_01s0026g00710.t01	Wine grape	nucleus	31.52	32.1
Zm00001d041345_P001	Maize	cytosol	33.33	31.52
Zm00001d030894_P002	Maize	nucleus	32.73	31.3
GSMUA_Achr4P07110_001	Banana	nucleus	29.7	30.62
EES17294	Sorghum	nucleus	33.33	30.3
TraesCS5B01G075000.1	Wheat	nucleus	31.82	29.83
TraesCS5D01G080600.1	Wheat	nucleus	31.52	29.55
TraesCS5A01G068600.1	Wheat	nucleus	31.21	29.34
HORVU5Hr1G018180.1	Barley	nucleus	30.91	29.23
TraesCS4A01G234600.1	Wheat	cytosol	29.39	28.78
Os12t0588800-01	Rice	nucleus	31.52	28.49
TraesCS4B01G080500.1	Wheat	nucleus	28.79	28.27
Os03t0617500-01	Rice	cytosol, nucleus	32.12	28.19
TraesCS4D01G079400.1	Wheat	cytosol	28.18	27.6
Zm00001d033330_P001	Maize	nucleus	29.39	27.4
EER91226	Sorghum	nucleus	30.3	27.03
VIT_07s0129g01100.t01	Wine grape	nucleus	25.15	26.86
Zm00001d013728_P001	Maize	cytosol	29.39	26.58
TraesCS4A01G046900.1	Wheat	nucleus	28.18	26.5
TraesCS4B01G257900.1	Wheat	cytosol	26.36	26.36
VIT_03s0091g01060.t01	Wine grape	nucleus	28.18	26.27
VIT_00s0322g00010.t01	Wine grape	nucleus	24.24	26.23
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	27.27	26.16
VIT_12s0134g00500.t01	Wine grape	nucleus	23.03	25.85
VIT_00s0199g00210.t01	Wine grape	nucleus	27.58	25.78
Os03t0203800-01	Rice	nucleus	26.67	25.51
VIT_18s0001g07220.t01	Wine grape	nucleus	26.97	25.07
EER92677	Sorghum	nucleus	26.36	24.51
VIT_00s0203g00160.t01	Wine grape	cytosol	23.03	24.05
VIT_18s0001g09920.t01	Wine grape	nucleus	26.97	23.92
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	25.45	23.8
HORVU4Hr1G013700.2	Barley	plastid	28.18	23.54
VIT_00s0194g00280.t01	Wine grape	mitochondrion	19.39	22.46
VIT_03s0180g00040.t01	Wine grape	nucleus	25.15	21.5
VIT_08s0007g00790.t01	Wine grape	nucleus	20.0	19.53
Zm00001d028092_P001	Maize	cytosol	14.85	18.01
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	5.15	14.17
Zm00001d003439_P001	Maize	plastid	4.85	12.6

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100854424	wikigene:100854424	MapMan:13.1.1.1.4	EMBL:AM435769	ProteinID:CAN71643
ProteinID:CAN71643.1	ProteinID:CBI33697	ProteinID:CBI33697.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:D7TT75	EMBL:FN596246	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100854424	wikigene:LOC100854424	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF255	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001BE42BD
ArrayExpress:VIT_07s0129g00200	EnsemblPlantsGene:VIT_07s0129g00200	EnsemblPlants:VIT_07s0129g00200.t01	RefSeq:XP_003632504	RefSeq:XP_003632504.1	RefSeq:XP_003632504.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:15472852..15474421

Molecular Weight (calculated)

37926.3 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.266

Length

330 amino acids

Sequence
(BLAST)

001: MENSDTSETS YSLPSLLCQE NEACFGEEEQ DQYMNLDPCL FSQSEDEYIQ SLVKRETKST MSSDNRSITN QSWLKRARLD SIKWVLNTRA FFGFQYRTAY
101: LCVAYFDLFL SRRSIDNERF WATGLLSVAC LSLAAKMEEL RVPNLSEFPV EGYYFDNKVI RRMELMVLET LEWKMLSITP FDFIPCFINK FCGESKSKEL
201: VSRTMELLLA ITREVNLMDH RPSVIAAAAV LAAFDGQLTR KTMDCKMSVI SLWGSRENEH IFSCYRLLQE IEMGKSKTPK QLISPNLSLS DNSSSIDVDE
301: SSFTSAVGSK RRLIYNDCDE VCQSAKICHR

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.