Factsheet for VIT_03s0091g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35652	Soybean	nucleus	54.52	63.91
KRG91131	Soybean	nucleus	55.08	60.19
GSMUA_Achr7P26100_001	Banana	nucleus	48.87	47.14
VIT_00s0322g00010.t01	Wine grape	nucleus	37.57	43.61
GSMUA_Achr1P22570_001	Banana	nucleus	46.05	42.78
VIT_01s0026g00710.t01	Wine grape	nucleus	37.85	41.36
VIT_18s0001g07220.t01	Wine grape	nucleus	35.31	35.21
VIT_00s0199g00210.t01	Wine grape	nucleus	31.92	32.01
VIT_07s0129g01100.t01	Wine grape	nucleus	25.99	29.77
VIT_12s0134g00500.t01	Wine grape	nucleus	24.58	29.59
VIT_00s0194g00280.t01	Wine grape	mitochondrion	23.16	28.77
VIT_07s0129g00200.t01	Wine grape	nucleus	26.27	28.18
VIT_03s0180g00040.t01	Wine grape	nucleus	29.94	27.46
VIT_18s0001g09160.t01	Wine grape	nucleus	24.58	27.44
VIT_18s0001g09920.t01	Wine grape	nucleus	27.4	26.08
VIT_08s0007g00790.t01	Wine grape	nucleus	24.58	25.74
VIT_00s0203g00160.t01	Wine grape	cytosol	22.32	25.0

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100251483	wikigene:100251483	MapMan:13.1.1.1.4	EMBL:AM431022	ProteinID:CAN66965
ProteinID:CAN66965.1	ProteinID:CBI22435	ProteinID:CBI22435.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:D7SXN5	EMBL:FN595242	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100251483	wikigene:LOC100251483	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF224	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0001982E8F	ArrayExpress:VIT_03s0091g01060	EnsemblPlantsGene:VIT_03s0091g01060	EnsemblPlants:VIT_03s0091g01060.t01	unigene:Vvi.17789	RefSeq:XP_002267356
RefSeq:XP_002267356.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:7673917..7675754

Molecular Weight (calculated)

39508.6 Da

IEP (calculated)

4.970

GRAVY (calculated)

-0.229

Length

354 amino acids

Sequence
(BLAST)

001: MAQSPDHFSA PTAAASLYCA EDVEDVVSWD SDTWISDPGS SPLVYAHSPP FDESTIERFF GSEPDHRPME DYLCRCRDRS VDVTSRQDSI NWILKVHAYY
101: HFRPVTAILS VNYLDRFLSR HALPQGNGWP FQLLSVACLS LAAKMEETHV PLLLDLQMFQ TKFVFEPKTI QRMELWVMAN LNWRLRSVTP FDFIDYFASK
201: LPCSSASRHD LLTRVFSVSA DLILNTTRVV DFLGFSPSVI AAAAVISASG KRVDFPAGGD WTPESFYERV DREVVRSCHQ LMEEYLIDTC PSAPLKDLRP
301: EPPAPASPVG VLDAAACGSC ETRSENPGLS EANPPQPPPP NKRPRFSAPG VQQP

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.