Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0056g00210.t01 | |
| VIT_15s0045g00310.t01 | |
| VIT_18s0122g00550.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70210.1 | VIT_18s0122g00550.t01 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | VIT_15s0045g00310.t01 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | VIT_08s0056g00210.t01 | AT3G54180.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69476 | Soybean | nucleus | 80.56 | 76.99 |
| KRG99255 | Soybean | nucleus | 75.62 | 70.4 |
| Solyc05g006050.2.1 | Tomato | nucleus | 70.37 | 67.66 |
| PGSC0003DMT400040287 | Potato | nucleus | 70.06 | 67.56 |
| KRH74675 | Soybean | nucleus, plastid | 79.63 | 67.54 |
| KRH45743 | Soybean | nucleus | 74.38 | 66.94 |
| CDY38800 | Canola | nucleus | 63.27 | 64.26 |
| CDY11608 | Canola | nucleus | 62.35 | 63.72 |
| AT1G70210.1 | Thale cress | nucleus | 65.74 | 62.83 |
| Bra007901.1-P | Field mustard | nucleus | 62.96 | 60.18 |
| CDY67142 | Canola | nucleus | 62.96 | 60.18 |
| CDY59943 | Canola | nucleus | 64.2 | 57.62 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 49.07 | 53.72 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 47.84 | 51.16 |
| Os09t0382300-00 | Rice | nucleus | 45.68 | 48.05 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 47.84 | 47.84 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 47.22 | 47.81 |
| OQU89443 | Sorghum | nucleus | 47.84 | 46.55 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 47.22 | 42.86 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 50.93 | 42.42 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 47.84 | 42.23 |
| Os06t0236600-00 | Rice | nucleus | 45.68 | 40.77 |
| Zm00001d020353_P001 | Maize | nucleus | 40.74 | 39.88 |
| VIT_03s0091g01060.t01 | Wine grape | nucleus | 41.36 | 37.85 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 38.58 | 35.21 |
| VIT_00s0322g00010.t01 | Wine grape | nucleus | 32.41 | 34.43 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 36.42 | 33.43 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 30.25 | 33.33 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 31.48 | 33.01 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 31.17 | 31.86 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 32.1 | 31.52 |
| VIT_00s0203g00160.t01 | Wine grape | cytosol | 27.47 | 28.16 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 31.48 | 26.42 |
| VIT_08s0007g00790.t01 | Wine grape | nucleus | 27.47 | 26.33 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 23.15 | 26.32 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 29.94 | 26.08 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100255261 | wikigene:100255261 | MapMan:13.1.1.1.4 | ProteinID:CBI32091 | ProteinID:CBI32091.3 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | UniProt:D7TNL8 | EMBL:FN596002 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EntrezGene:LOC100255261 | wikigene:LOC100255261 |
| PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:TC65375 | UniParc:UPI00015CAD65 | ArrayExpress:VIT_01s0026g00710 |
| EnsemblPlantsGene:VIT_01s0026g00710 | EnsemblPlants:VIT_01s0026g00710.t01 | unigene:Vvi.1216 | RefSeq:XP_002268394 | RefSeq:XP_002268394.1 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:9503470..9506741
Molecular Weight (calculated)
36358.3 Da
IEP (calculated)
4.975
GRAVY (calculated)
-0.103
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSYSDRFS DLLCGEDSSI LSGDLPECSS DLESPTDIEE SIAGFIEDER NFVPGFDYLA RFRSHSLDAS AREESVAWIL KVQAYHGFQP LTAYLSVNYL
101: DRFLYSRRLP QTNGWPLQLL SVACLSLAAK MEEPLVPSLL DLQVEGAKFI FESKTIRRME LLVLGVLDWR LRSITPFSFI GFFAYKLDSS GSVIGFLISR
201: ATQIILSNIQ EASFLEYWPS CIAAAAILCA ANEIPKLSLV DPERAESWCD GLSKEKIISC YQLMQEITVD NNRRKPPKLL PQLRVTIRAR VRSSGSSSSS
301: SSSSYKRRKL NNCLWVDDDK GNGD
101: DRFLYSRRLP QTNGWPLQLL SVACLSLAAK MEEPLVPSLL DLQVEGAKFI FESKTIRRME LLVLGVLDWR LRSITPFSFI GFFAYKLDSS GSVIGFLISR
201: ATQIILSNIQ EASFLEYWPS CIAAAAILCA ANEIPKLSLV DPERAESWCD GLSKEKIISC YQLMQEITVD NNRRKPPKLL PQLRVTIRAR VRSSGSSSSS
301: SSSSYKRRKL NNCLWVDDDK GNGD
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.