CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH06014
KRH11866
KRH17547
KRH36887
KRH37522
KRH42252
KRH47306
KRH48128
KRH58370

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	KRH06014	AT1G76540.1	12857813
AT1G70210.1	KRH17547	AT1G76540.1	12857813
AT1G70210.1	KRH37522	AT1G76540.1	12857813
AT1G70210.1	KRH48128	AT1G76540.1	12857813
AT1G70210.1	KRH11866	AT3G48750.1	12857813
AT1G70210.1	KRH36887	AT3G48750.1	12857813
AT1G70210.1	KRH42252	AT3G48750.1	12857813
AT1G70210.1	KRH58370	AT3G48750.1	12857813
AT1G70210.1	KRH47306	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74675	Soybean	nucleus, plastid	93.51	82.98
VIT_01s0026g00710.t01	Wine grape	nucleus	76.99	80.56
KRG99255	Soybean	nucleus	81.42	79.31
KRH45743	Soybean	nucleus	80.53	75.83
Solyc05g006050.2.1	Tomato	nucleus	67.85	68.25
PGSC0003DMT400040287	Potato	nucleus	67.26	67.86
AT1G70210.1	Thale cress	nucleus	63.13	63.13
CDY38800	Canola	nucleus	58.11	61.76
CDY11608	Canola	nucleus	57.52	61.51
Bra007901.1-P	Field mustard	nucleus	59.88	59.88
CDY67142	Canola	nucleus	59.88	59.88
CDY59943	Canola	nucleus	61.36	57.62
GSMUA_Achr3P06030_001	Banana	cytosol	45.72	52.36
TraesCS5A01G200500.2	Wheat	nucleus	46.9	49.07
Os09t0382300-00	Rice	nucleus	44.54	49.03
TraesCS5B01G199100.1	Wheat	nucleus	46.02	48.75
GSMUA_Achr9P28180_001	Banana	nucleus	43.36	48.51
OQU89443	Sorghum	nucleus	46.31	47.15
HORVU5Hr1G059770.2	Barley	nucleus	46.02	43.7
TraesCS5D01G206200.1	Wheat	nucleus	46.9	43.32
Zm00001d020353_P001	Maize	nucleus	40.12	41.09
GSMUA_Achr7P19980_001	Banana	nucleus	46.9	40.87
KRH35652	Soybean	nucleus	36.28	40.73
KRG91131	Soybean	nucleus	37.76	39.51
Os06t0236600-00	Rice	nucleus	42.18	39.39
KRH58137	Soybean	nucleus	35.4	37.74
KRH52917	Soybean	nucleus	37.46	36.08
KRH16827	Soybean	nucleus	37.46	35.77
KRH04404	Soybean	vacuole	35.69	35.59
KRH62196	Soybean	nucleus	36.28	34.94
KRH72435	Soybean	nucleus	36.58	34.73
KRH69654	Soybean	cytosol	24.78	34.57
KRH05626	Soybean	cytosol	21.24	33.49
KRH21593	Soybean	nucleus	26.55	33.09
KRH45568	Soybean	nucleus	33.33	32.66
KRG99448	Soybean	nucleus	33.92	32.12
KRH10729	Soybean	nucleus	25.66	31.99
KRH74510	Soybean	nucleus	33.92	31.86
KRH15412	Soybean	cytosol	24.48	30.74
KRH61407	Soybean	nucleus	28.02	30.45
KRH28424	Soybean	nucleus	30.09	30.45
KRH61348	Soybean	nucleus	31.27	30.37
KRH77118	Soybean	nucleus	29.2	29.82
KRH77050	Soybean	nucleus, plastid	29.2	29.64
KRH52092	Soybean	nucleus	27.43	29.62
KRH28363	Soybean	nucleus	28.91	29.61
KRH52038	Soybean	nucleus	31.27	29.28
KRH04529	Soybean	nucleus	31.86	29.11
KRH22479	Soybean	cytosol	26.84	28.8
KRH26876	Soybean	nucleus	26.25	28.25
KRH57973	Soybean	nucleus	31.56	27.94
KRG90996	Soybean	nucleus	31.56	27.23
KRH25470	Soybean	nucleus	25.66	26.85
KRH56054	Soybean	cytosol, nucleus, plasma membrane	25.96	26.75
KRH35760	Soybean	nucleus	30.97	26.12
KRH65892	Soybean	cytosol	21.53	25.35
KRH75669	Soybean	cytosol	21.24	24.91
KRH54628	Soybean	cytosol	11.21	24.84
KRH54622	Soybean	cytosol	11.21	24.84

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100775224	MapMan:13.1.1.1.4	EMBL:ACUP02000716	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_02G030200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:I1JBY4	EnsemblPlants:KRH69476	ProteinID:KRH69476	ProteinID:KRH69476.1	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002336F39	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:2795793..2799516

Molecular Weight (calculated)

37951.0 Da

IEP (calculated)

4.864

GRAVY (calculated)

-0.149

Length

339 amino acids

Sequence
(BLAST)

001: MSVSCSNCFP DDDDSFLLCG EDSSGIIDSS PECSSDLDSP PPSEAEAESI AGFIEDERNF VPGFEYLNRF QSRSLDASAR EESVAWILKV QAYYAFQPLT
101: AYLSVNYLDR FLNSRQLPQT NGWPLQLLSV ACLSLAAKME EPLVPSLLDL QVEGAKYVFE PKTIRRMELL VLGVLDWRLR SVTPFSFLDF FACKLDSSGT
201: FTGFLISRAT QIILSNIQEA SFLAYWPSCI AAASILHAAN EIPNWSFVRP EHAESWCEGL RKEKVIGCYQ LMQELVINNN RRKPPKVLPQ LRVTSRPIMR
301: SSVSSFSASS SFSPSSSLSC KRRKLNNSLW VDDDKGNSK

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.