Factsheet for Bra007901.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014835.1-P
Bra015735.1-P
Bra018036.1-P
Bra029917.1-P
Bra039199.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	Bra015735.1-P	AT1G76540.1	12857813
AT1G70210.1	Bra039199.1-P	AT2G23430.1	12569402
AT1G70210.1	Bra018036.1-P	AT3G48750.1	12857813
AT1G70210.1	Bra029917.1-P	AT3G48750.1	12857813
AT1G70210.1	Bra014835.1-P	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67142	Canola	nucleus	100.0	100.0
AT1G70210.1	Thale cress	nucleus	81.71	81.71
VIT_01s0026g00710.t01	Wine grape	nucleus	60.18	62.96
KRH69476	Soybean	nucleus	59.88	59.88
Solyc05g006050.2.1	Tomato	nucleus	57.52	57.86
KRG99255	Soybean	nucleus	58.7	57.18
PGSC0003DMT400040287	Potato	nucleus	56.64	57.14
KRH45743	Soybean	nucleus	58.41	55.0
KRH74675	Soybean	nucleus, plastid	59.0	52.36
Os09t0382300-00	Rice	nucleus	43.36	47.73
TraesCS5B01G199100.1	Wheat	nucleus	44.25	46.88
TraesCS5A01G200500.2	Wheat	nucleus	44.54	46.6
OQU89443	Sorghum	nucleus	45.13	45.95
GSMUA_Achr3P06030_001	Banana	cytosol	40.12	45.95
GSMUA_Achr9P28180_001	Banana	nucleus	41.0	45.87
HORVU5Hr1G059770.2	Barley	nucleus	43.95	41.74
TraesCS5D01G206200.1	Wheat	nucleus	45.13	41.69
Zm00001d020353_P001	Maize	nucleus	38.05	38.97
GSMUA_Achr7P19980_001	Banana	nucleus	43.36	37.79
Os06t0236600-00	Rice	nucleus	39.53	36.91
Bra038518.1-P	Field mustard	nucleus	31.27	36.55
Bra037817.1-P	Field mustard	nucleus	28.02	33.69
Bra031858.1-P	Field mustard	nucleus	29.2	33.11
Bra009031.1-P	Field mustard	nucleus	28.61	32.66
Bra024383.1-P	Field mustard	nucleus	29.2	32.14
Bra030232.1-P	Field mustard	nucleus	33.63	32.11
Bra036051.1-P	Field mustard	nucleus	32.74	31.44
Bra012909.1-P	Field mustard	nucleus	29.79	30.79
Bra029992.1-P	Field mustard	nucleus	31.56	30.4
Bra034198.1-P	Field mustard	nucleus	25.66	29.19
Bra017629.1-P	Field mustard	nucleus	31.27	28.8
Bra034612.1-P	Field mustard	nucleus	30.09	27.72
Bra012146.1-P	Field mustard	nucleus	28.91	27.68
Bra011501.1-P	Field mustard	nucleus	30.09	27.35
Bra009612.1-P	Field mustard	cytosol	23.89	23.82
Bra017840.1-P	Field mustard	nucleus	23.89	23.75
Bra005708.1-P	Field mustard	cytosol	22.42	22.16

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra007901	EnsemblPlants:Bra007901.1	EnsemblPlants:Bra007901.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4CUK6	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000254688C	SEG:seg

Description

AT1G70210 (E=3e-146) CYCD1;1 | CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator

Coordinates

chrA02:+:11722375..11724231

Molecular Weight (calculated)

37900.1 Da

IEP (calculated)

5.008

GRAVY (calculated)

-0.121

Length

339 amino acids

Sequence
(BLAST)

001: MSSRRLSDCC KDMDLLCGED SSDVFSGEST ADISSEEIDS WPEESIASCL EDEGHFVPGL DYLSRFHSQS LDASAREDSV SWILKASVQA YYKFQPLTAY
101: LAVNYMDRFL YARRLPETSG WPMQLLAVAC LSLAAKMEEV LVPHLFDFQV EGVKYIFEAK TIQRMELLVL SVLDWRLRSV TPFSFLSFFA YKIDPQGTSL
201: GLFLTHATKI ILSNTKEASF LEYRPSSIAA AAILCVANEL PSLSSALNPH ESPETWCDGL SKEKIVKCYR LMKAMAIENN RRNSPKVIAK LRVSVRAAST
301: LMMPSEEPSF SSSASLSSPC KRRKLSDYSW VGDDNSSSE

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.