Factsheet for Bra009031.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001736.1-P
Bra005565.1-P
Bra013240.1-P
Bra018036.1-P
Bra021808.1-P
Bra022391.1-P
Bra022897.1-P
Bra029917.1-P
Bra034380.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	Bra034380.1-P	AT2G27970.1	20706207
AT5G10440.1	Bra005565.1-P	AT2G32710.1	20706207
AT5G10440.1	Bra021808.1-P	AT2G32710.1	20706207
AT5G10440.1	Bra022897.1-P	AT2G32710.1	20706207
AT5G10440.1	Bra001736.1-P	AT3G19150.1	20706207
AT5G10440.1	Bra022391.1-P	AT3G19150.1	20706207
AT5G10440.1	Bra013240.1-P	AT3G24810.1	20706207
AT5G10440.1	Bra018036.1-P	AT3G48750.1	20706207
AT5G10440.1	Bra029917.1-P	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69832	Canola	nucleus	99.66	99.66
AT5G10440.1	Thale cress	nucleus	77.1	76.85
Bra024383.1-P	Field mustard	nucleus	64.65	62.34
Bra037817.1-P	Field mustard	nucleus	55.22	58.16
Bra031858.1-P	Field mustard	nucleus	58.25	57.86
Bra038518.1-P	Field mustard	nucleus	43.43	44.48
KRH69654	Soybean	cytosol	34.01	41.56
PGSC0003DMT400037827	Potato	nucleus	47.81	41.28
GSMUA_Achr6P02210_001	Banana	plastid	34.01	40.56
Solyc05g051410.2.1	Tomato	nucleus	46.8	40.41
Solyc11g010460.1.1	Tomato	cytosol	42.42	40.38
VIT_00s0199g00210.t01	Wine grape	nucleus	47.81	40.23
Bra030232.1-P	Field mustard	nucleus	46.8	39.15
KRH74510	Soybean	nucleus	47.14	38.78
GSMUA_Achr8P23430_001	Banana	nucleus	45.12	38.62
KRG99448	Soybean	nucleus	45.79	37.99
KRH45568	Soybean	nucleus	44.11	37.86
GSMUA_Achr9P15070_001	Banana	nucleus	43.77	37.14
GSMUA_Achr10P...	Banana	nucleus	39.73	36.76
GSMUA_Achr3P06730_001	Banana	nucleus	42.76	36.6
GSMUA_Achr5P22980_001	Banana	nucleus	42.09	35.82
GSMUA_Achr10P...	Banana	nucleus	41.41	35.76
Zm00001d018128_P001	Maize	nucleus	42.09	35.21
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	42.42	35.2
Zm00001d052185_P001	Maize	nucleus	42.42	35.0
TraesCS6B01G345300.1	Wheat	plastid	41.41	34.84
GSMUA_Achr5P17920_001	Banana	nucleus	40.4	34.68
PGSC0003DMT400041637	Potato	nucleus	45.79	34.52
HORVU6Hr1G077500.1	Barley	nucleus	40.4	34.19
TraesCS6A01G314900.1	Wheat	nucleus	40.74	33.8
GSMUA_Achr7P12850_001	Banana	nucleus	40.4	33.24
EES07560	Sorghum	nucleus	39.73	32.96
KXG19603	Sorghum	nucleus	34.68	29.6
Bra007901.1-P	Field mustard	nucleus	32.66	28.61
TraesCS6D01G294200.1	Wheat	nucleus	21.55	25.4
Bra034198.1-P	Field mustard	nucleus	25.25	25.17
Bra036051.1-P	Field mustard	nucleus	29.63	24.93
Bra029992.1-P	Field mustard	nucleus	28.62	24.15
Bra012909.1-P	Field mustard	nucleus	26.26	23.78
Bra012146.1-P	Field mustard	nucleus	25.59	21.47
Bra034612.1-P	Field mustard	nucleus	24.92	20.11
Bra011501.1-P	Field mustard	nucleus	25.25	20.11
Bra017629.1-P	Field mustard	nucleus	24.58	19.84
Bra017840.1-P	Field mustard	nucleus	22.22	19.35
Bra009612.1-P	Field mustard	cytosol	21.21	18.53
Bra005708.1-P	Field mustard	cytosol	20.2	17.49

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra009031	EnsemblPlants:Bra009031.1	EnsemblPlants:Bra009031.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791	GO:GO:0009987
GO:GO:0010440	UniProt:M4CXT4	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00025446C6
SEG:seg	:	:	:	:	:

Description

AT5G10440 (E=6e-111) CYCD4;2 | CYCD4;2 (cyclin d4;2); cyclin-dependent protein kinase

Coordinates

chrA10:+:14949484..14951072

Molecular Weight (calculated)

33776.5 Da

IEP (calculated)

5.989

GRAVY (calculated)

-0.190

Length

297 amino acids

Sequence
(BLAST)

001: MSEIERSSFD DENSITSYRT SILQMGFPSE EDEETIREMI HKERQHSPRD DYLERLRSGD LDLNVRNQAL DWIRKACEEL RFGPVCICLA VNYLDRFLSV
101: HDLPSGKAWA VQLLAVSCLS LAVKIEDIKV PELIIHLQVG GDPWFVFEAK YVQRMELLVL NVLKWRLRAV TPCSYIRYFL SKIYGYDQEP SSRLISRSLQ
201: VIASTTKGID FLEFRASEIG AAVALSVSEE LHKLQFDKFS FSSLCPHLDK ERVKKIGEMI ERNGSASCPQ TPPNNNAVLQ FKTLSTSSVS SSLTSLS

Best Arabidopsis Sequence Match ( AT5G10440.1 )
(BLAST)

001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS

Arabidopsis Description

CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.