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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • nucleus 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, secretory
iPSORT:secretory
MultiLoc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:nucleus
 plastid: 22160430
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G151400.1
TraesCS1B01G168900.1
TraesCS1D01G148400.2
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G332500.1
TraesCS4D01G347600.1
TraesCS5A01G240600.1
TraesCS5A01G506500.1
TraesCS5A01G521700.1
TraesCS5B01G238600.1
TraesCS5D01G247100.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G10440.1 TraesCS4A01G410900.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4B01G311000.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4D01G308900.1 AT2G27960.1 20706207
AT5G10440.1 TraesCS4A01G410900.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS4B01G311000.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS4D01G308900.1 AT2G27970.1 20706207
AT5G10440.1 TraesCS1A01G151400.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS1B01G168900.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS1D01G148400.2 AT2G32710.1 20706207
AT5G10440.1 TraesCS4D01G332500.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS5A01G506500.1 AT2G32710.1 20706207
AT5G10440.1 TraesCS5A01G240600.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS5B01G238600.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS5D01G247100.1 AT3G19150.1 20706207
AT5G10440.1 TraesCS4B01G353600.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS4D01G347600.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS5A01G521700.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS6A01G078200.1 AT3G48750.1 20706207
AT5G10440.1 TraesCS6B01G105100.1 AT3G48750.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G077500.1 Barley nucleus 96.32 96.87
TraesCS6D01G294200.1 Wheat nucleus 69.12 96.83
TraesCS6A01G314900.1 Wheat nucleus 97.17 95.81
Zm00001d052185_P001 Maize nucleus 77.05 75.56
Zm00001d018128_P001 Maize nucleus 75.92 75.49
EES07560 Sorghum nucleus 75.92 74.86
GSMUA_Achr9P15070_001 Banana nucleus 56.37 56.86
GSMUA_Achr7P19040_001 Banana cytosol, endoplasmic reticulum, nucleus 57.51 56.7
GSMUA_Achr10P... Banana nucleus 51.27 56.39
GSMUA_Achr6P02210_001 Banana plastid 39.38 55.82
GSMUA_Achr8P23430_001 Banana nucleus 54.67 55.62
GSMUA_Achr3P06730_001 Banana nucleus 54.39 55.33
GSMUA_Achr10P... Banana nucleus 53.26 54.65
GSMUA_Achr5P17920_001 Banana nucleus 53.54 54.62
GSMUA_Achr5P22980_001 Banana nucleus 53.82 54.44
GSMUA_Achr7P12850_001 Banana nucleus 54.67 53.46
GSMUA_Achr10P... Banana nucleus 52.69 52.39
GSMUA_Achr3P21210_001 Banana nucleus 51.27 51.27
VIT_18s0001g07220.t01 Wine grape nucleus 50.99 50.7
GSMUA_Achr2P22330_001 Banana nucleus 50.14 49.72
Solyc11g010460.1.1 Tomato cytosol 43.91 49.68
KRH16827 Soybean nucleus 49.29 49.01
KRH72435 Soybean nucleus 48.73 48.18
KRH45568 Soybean nucleus 47.03 47.98
GSMUA_Achr6P10260_001 Banana cytosol 48.73 47.38
Solyc04g076040.2.1 Tomato nucleus 47.59 47.32
TraesCS5B01G243900.1 Wheat nucleus 47.31 47.04
TraesCS5B01G244100.1 Wheat nucleus 47.59 46.67
CDY54717 Canola nucleus 34.84 46.24
PGSC0003DMT400033588 Potato nucleus 46.46 46.07
KRG99448 Soybean nucleus 46.46 45.81
CDX81286 Canola nucleus 34.28 45.49
TraesCS2B01G190700.1 Wheat nucleus 44.19 45.35
KRH52917 Soybean nucleus 44.76 44.89
KRH62196 Soybean nucleus 44.76 44.89
Bra038518.1-P Field mustard nucleus 36.83 44.83
Bra031858.1-P Field mustard nucleus 37.96 44.82
PGSC0003DMT400037827 Potato nucleus 43.63 44.77
Solyc12g087900.1.1 Tomato nucleus 39.94 44.62
CDY13755 Canola nucleus 36.83 44.52
VIT_00s0199g00210.t01 Wine grape nucleus 44.19 44.19
Solyc05g051410.2.1 Tomato nucleus 43.06 44.19
KRH69654 Soybean cytosol 30.31 44.03
AT5G65420.3 Thale cress nucleus 39.66 44.03
Bra037817.1-P Field mustard nucleus 35.13 43.97
CDY33959 Canola nucleus 37.96 43.93
AT5G10440.1 Thale cress nucleus 36.83 43.62
CDY37828 Canola nucleus 37.96 43.37
PGSC0003DMT400088718 Potato nucleus 37.96 43.23
CDY08795 Canola nucleus 37.39 42.86
KRH74510 Soybean nucleus 43.63 42.66
Bra024383.1-P Field mustard nucleus 37.11 42.53
CDX97009 Canola nucleus 34.84 41.98
Bra009031.1-P Field mustard nucleus 34.84 41.41
CDX69832 Canola nucleus 34.56 41.08
PGSC0003DMT400041637 Potato nucleus 45.04 40.36
CDY14561 Canola cytosol 37.11 40.31
AT2G22490.2 Thale cress nucleus 40.23 39.23
Bra030232.1-P Field mustard nucleus 39.38 39.15
CDY25602 Canola nucleus 39.38 39.04
CDX89480 Canola nucleus 39.09 38.87
CDX76917 Canola nucleus 38.81 38.7
TraesCS5B01G199100.1 Wheat nucleus 32.29 35.62
TraesCS2B01G234800.1 Wheat cytosol, nucleus, plasma membrane 27.2 28.15
TraesCS4B01G080500.1 Wheat nucleus 25.21 26.49
TraesCS4B01G140400.1 Wheat cytosol, nucleus, plastid 24.36 25.9
TraesCS5B01G075000.1 Wheat nucleus 25.78 25.85
TraesCS5B01G158400.1 Wheat cytosol 25.78 25.71
TraesCS4B01G257900.1 Wheat cytosol 22.66 24.24
Protein Annotations
EnsemblPlants:TraesCS6B01G345300.1EnsemblPlantsGene:TraesCS6B01G345300Gene3D:1.10.472.10GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NPANTHER:PTHR10177
PANTHER:PTHR10177:SF337PFAM:PF00134PFAM:PF02984ScanProsite:PS00292SEG:segSMART:SM00385
SMART:SM01332SUPFAM:SSF47954TIGR:cd00043MapMan:13.1.1.1.4::
Description
No Description!
Coordinates
chr6B:+:608996331..608998161
Molecular Weight (calculated)
38271.9 Da
IEP (calculated)
4.722
GRAVY (calculated)
0.140
Length
353 amino acids
Sequence
(BLAST)
001: MVPSGYDCAA SVLLCAEDNA AILGLDDDEE DCSWAAAAAT PPRIAADAAA AAEGFLVDHP VQSDECVAAL VETEKEHMPA DGYPQMLLRR PGALDLAAVR
101: RDAIDWIWKV IEHFNFAPLT AVLSVNYLDR FLSVYPLPEG KAWVTQLLAV ACLSLASKME ETYVPLPVDL QVVEANSAFE GKTIKRMELL VLSTLKWRMQ
201: AVTACSFIDY FLRKFNDHDA PSMLAFSRST DLILSTAKGA DFLVFRPSEI AASVALAAFG ERNTSVVERA TTTCKFINKE RVLRCYELIQ DKIAMGTIVL
301: KSAGSSMFSV PQSPIGVLDA AACLSQQSDD TAVGSPATCY QASSASKRRR IGR
Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.