Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024383.1-P | Field mustard | nucleus | 79.56 | 82.14 |
| CDY08795 | Canola | nucleus | 79.25 | 81.82 |
| CDY14561 | Canola | cytosol | 82.7 | 80.92 |
| CDY54717 | Canola | nucleus | 66.04 | 78.95 |
| CDX81286 | Canola | nucleus | 66.04 | 78.95 |
| Bra031858.1-P | Field mustard | nucleus | 71.7 | 76.25 |
| CDY33959 | Canola | nucleus | 72.33 | 75.41 |
| Bra037817.1-P | Field mustard | nucleus | 66.67 | 75.18 |
| CDY37828 | Canola | nucleus | 72.96 | 75.08 |
| AT5G10440.1 | Thale cress | nucleus | 65.72 | 70.13 |
| Solyc11g010460.1.1 | Tomato | cytosol | 45.91 | 46.79 |
| PGSC0003DMT400037827 | Potato | nucleus | 49.69 | 45.93 |
| Solyc05g051410.2.1 | Tomato | nucleus | 48.43 | 44.77 |
| KRH69654 | Soybean | cytosol | 33.96 | 44.44 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 33.33 | 42.57 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 46.23 | 42.36 |
| KRH45568 | Soybean | nucleus | 45.91 | 42.2 |
| GSMUA_Achr10P... | Banana | nucleus | 42.14 | 41.74 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 46.23 | 41.64 |
| KRG99448 | Soybean | nucleus | 46.86 | 41.62 |
| KRH74510 | Soybean | nucleus | 47.17 | 41.55 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 45.6 | 41.43 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 44.65 | 40.92 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 44.03 | 40.11 |
| PGSC0003DMT400041637 | Potato | nucleus | 49.37 | 39.85 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 44.65 | 39.66 |
| TraesCS6B01G345300.1 | Wheat | plastid | 44.03 | 39.66 |
| GSMUA_Achr10P... | Banana | nucleus | 42.77 | 39.53 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 43.4 | 39.32 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 42.77 | 39.31 |
| AT2G22490.2 | Thale cress | nucleus | 44.65 | 39.23 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 44.03 | 38.78 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 43.4 | 38.55 |
| Zm00001d018128_P001 | Maize | nucleus | 42.45 | 38.03 |
| Zm00001d052185_P001 | Maize | nucleus | 42.77 | 37.78 |
| EES07560 | Sorghum | nucleus | 40.88 | 36.31 |
| KXG19603 | Sorghum | nucleus | 37.74 | 34.48 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 24.84 | 31.35 |
| AT1G70210.1 | Thale cress | nucleus | 32.39 | 30.38 |
| AT4G03270.1 | Thale cress | nucleus | 24.84 | 26.16 |
| AT3G50070.1 | Thale cress | nucleus | 29.25 | 25.76 |
| AT4G34160.1 | Thale cress | nucleus | 28.93 | 24.47 |
| AT4G37630.1 | Thale cress | nucleus | 22.64 | 22.29 |
| AT5G67260.2 | Thale cress | nucleus | 26.73 | 21.04 |
| AT5G02110.1 | Thale cress | cytosol | 18.55 | 17.3 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:836667 | ProteinID:AED98051.1 | ArrayExpress:AT5G65420 | EnsemblPlantsGene:AT5G65420 |
| RefSeq:AT5G65420 | TAIR:AT5G65420 | RefSeq:AT5G65420-TAIR-G | EnsemblPlants:AT5G65420.3 | TAIR:AT5G65420.3 | Unigene:At.415 |
| Symbol:CYCD4;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | UniProt:F4KHY3 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009744 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010440 | RefSeq:NP_001190620.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0001E93171 | SEG:seg | : | : | : | : |
Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
Coordinates
chr5:-:26141470..26143993
Molecular Weight (calculated)
35918.2 Da
IEP (calculated)
4.713
GRAVY (calculated)
-0.119
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKIRG LCRTDREACE
101: VHQFGPLCFC LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL
201: RKMSKCDQEP SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA
301: CCFSFKTHDS SSSYTHLS
101: VHQFGPLCFC LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL
201: RKMSKCDQEP SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA
301: CCFSFKTHDS SSSYTHLS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.