Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54717 | Canola | nucleus | 93.61 | 93.61 |
| CDY08795 | Canola | nucleus | 79.32 | 68.51 |
| CDY37828 | Canola | nucleus | 77.44 | 66.67 |
| CDY33959 | Canola | nucleus | 76.32 | 66.56 |
| AT5G65420.3 | Thale cress | nucleus | 78.95 | 66.04 |
| CDY14561 | Canola | cytosol | 79.7 | 65.23 |
| CDX97009 | Canola | nucleus | 60.15 | 54.61 |
| CDX69832 | Canola | nucleus | 60.9 | 54.55 |
| KRH69654 | Soybean | cytosol | 39.85 | 43.62 |
| Solyc11g010460.1.1 | Tomato | cytosol | 47.37 | 40.38 |
| CDY13755 | Canola | nucleus | 43.61 | 39.73 |
| PGSC0003DMT400037827 | Potato | nucleus | 51.13 | 39.53 |
| Solyc05g051410.2.1 | Tomato | nucleus | 50.38 | 38.95 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 35.34 | 37.75 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 48.87 | 37.46 |
| KRH45568 | Soybean | nucleus | 48.12 | 36.99 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 48.5 | 36.54 |
| CDY25602 | Canola | nucleus | 48.87 | 36.52 |
| CDX89480 | Canola | nucleus | 48.5 | 36.34 |
| CDX76917 | Canola | nucleus | 48.12 | 36.16 |
| KRG99448 | Soybean | nucleus | 48.12 | 35.75 |
| GSMUA_Achr10P... | Banana | nucleus | 42.86 | 35.51 |
| KRH74510 | Soybean | nucleus | 48.12 | 35.46 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 46.24 | 35.45 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 46.62 | 35.43 |
| PGSC0003DMT400041637 | Potato | nucleus | 51.13 | 34.52 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 44.74 | 34.39 |
| TraesCS6B01G345300.1 | Wheat | plastid | 45.49 | 34.28 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 45.11 | 34.19 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 44.74 | 34.1 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 45.86 | 34.08 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 45.49 | 33.52 |
| GSMUA_Achr10P... | Banana | nucleus | 43.23 | 33.43 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 44.74 | 33.24 |
| Zm00001d018128_P001 | Maize | nucleus | 43.61 | 32.68 |
| Zm00001d052185_P001 | Maize | nucleus | 43.61 | 32.22 |
| KXG19603 | Sorghum | nucleus | 41.73 | 31.9 |
| EES07560 | Sorghum | nucleus | 42.48 | 31.56 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 19.92 | 30.81 |
| CDY11608 | Canola | nucleus | 35.34 | 29.65 |
| CDY38800 | Canola | nucleus | 34.21 | 28.53 |
| CDY67142 | Canola | nucleus | 35.34 | 27.73 |
| CDY59943 | Canola | nucleus | 35.71 | 26.32 |
| CDY17742 | Canola | nucleus | 33.83 | 25.35 |
| CDY02095 | Canola | nucleus | 31.2 | 25.3 |
| CDY30607 | Canola | nucleus | 33.46 | 25.21 |
| CDX83112 | Canola | nucleus | 33.08 | 25.0 |
| CDX68573 | Canola | nucleus | 32.71 | 24.72 |
| CDY23022 | Canola | nucleus | 30.45 | 24.62 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 23.31 | 24.6 |
| CDY22116 | Canola | nucleus | 26.32 | 23.49 |
| CDY12825 | Canola | nucleus | 30.83 | 22.91 |
| CDY21951 | Canola | nucleus | 25.94 | 22.85 |
| CDX76265 | Canola | nucleus | 30.83 | 22.47 |
| CDY01425 | Canola | nucleus | 29.7 | 22.32 |
| CDY57741 | Canola | nucleus | 30.45 | 22.19 |
| CDY49278 | Canola | nucleus | 30.08 | 21.68 |
| CDX72453 | Canola | nucleus | 29.32 | 21.67 |
| CDY69708 | Canola | nucleus | 30.45 | 21.66 |
| CDX75405 | Canola | nucleus | 30.08 | 21.45 |
| CDX90892 | Canola | nucleus | 11.65 | 20.39 |
| CDY29570 | Canola | nucleus | 25.56 | 20.36 |
| CDX72643 | Canola | nucleus | 25.56 | 20.0 |
| CDY10467 | Canola | cytosol | 22.18 | 17.4 |
| CDY40332 | Canola | cytosol | 22.18 | 17.35 |
| CDY55121 | Canola | cytosol | 21.43 | 16.62 |
| CDX80803 | Canola | cytosol | 21.43 | 12.64 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078CVY8 | EnsemblPlants:CDX81286 | ProteinID:CDX81286 | ProteinID:CDX81286.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00134805001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0004EE0ADC |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g06970D
Coordinates
chrLK031824:-:708498..709845
Molecular Weight (calculated)
30444.7 Da
IEP (calculated)
5.224
GRAVY (calculated)
-0.204
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEHLEQSIL CTETTNVGDE EKGMIVDKNP ISQMGFPSES EEIIREMMEK EKQHLPRDDY IKRLRSGDLD LNVRRTEALN WIWKACEEHH FGPLCVCLSV
101: NYLDRFLSVH DHPNIDKAWT MQLLALACLS LAAKVEETEV PLLIDLQVGD PQFVFEAKSI QRMELLVLNR LEWRLRAITP CSYIRYFLRK MSKCDQEPSN
201: TLISRSLQVI VSKTKAGIGF LDFRPSEVAA AVALSVSGEM HTVHFENSPL FSLLQKFQVN ASYGED
101: NYLDRFLSVH DHPNIDKAWT MQLLALACLS LAAKVEETEV PLLIDLQVGD PQFVFEAKSI QRMELLVLNR LEWRLRAITP CSYIRYFLRK MSKCDQEPSN
201: TLISRSLQVI VSKTKAGIGF LDFRPSEVAA AVALSVSGEM HTVHFENSPL FSLLQKFQVN ASYGED
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK VKNNPPNISN S
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK VKNNPPNISN S
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.