Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P15070_001 | Banana | nucleus | 77.23 | 76.57 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 74.93 | 74.93 |
| GSMUA_Achr10P... | Banana | nucleus | 63.11 | 68.22 |
| GSMUA_Achr10P... | Banana | nucleus | 67.44 | 68.02 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 68.3 | 67.91 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 69.74 | 67.6 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 48.41 | 67.47 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 64.84 | 65.03 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 65.13 | 62.6 |
| GSMUA_Achr10P... | Banana | nucleus | 61.96 | 60.56 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 58.5 | 57.02 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 57.35 | 56.37 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 57.64 | 55.1 |
| TraesCS6B01G345300.1 | Wheat | plastid | 55.62 | 54.67 |
| Solyc04g076040.2.1 | Tomato | nucleus | 55.62 | 54.37 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 54.47 | 53.85 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 54.76 | 53.07 |
| PGSC0003DMT400033588 | Potato | nucleus | 54.18 | 52.81 |
| Zm00001d052185_P001 | Maize | nucleus | 53.89 | 51.94 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 52.74 | 51.55 |
| KRH16827 | Soybean | nucleus | 52.45 | 51.27 |
| Zm00001d018128_P001 | Maize | nucleus | 51.87 | 50.7 |
| EES07560 | Sorghum | nucleus | 51.59 | 50.0 |
| KRH72435 | Soybean | nucleus | 51.01 | 49.58 |
| CDX81286 | Canola | nucleus | 37.46 | 48.87 |
| CDY54717 | Canola | nucleus | 37.18 | 48.5 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 35.16 | 48.41 |
| Bra038518.1-P | Field mustard | nucleus | 40.35 | 48.28 |
| KRH52917 | Soybean | nucleus | 48.7 | 48.01 |
| CDY13755 | Canola | nucleus | 40.35 | 47.95 |
| KRH74510 | Soybean | nucleus | 49.86 | 47.92 |
| KRH69654 | Soybean | cytosol | 33.43 | 47.74 |
| KRH62196 | Soybean | nucleus | 48.13 | 47.44 |
| KRG99448 | Soybean | nucleus | 48.7 | 47.21 |
| KRH45568 | Soybean | nucleus | 46.69 | 46.82 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.11 | 46.51 |
| Solyc11g010460.1.1 | Tomato | cytosol | 41.79 | 46.47 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 47.26 | 46.46 |
| AT5G65420.3 | Thale cress | nucleus | 42.36 | 46.23 |
| PGSC0003DMT400037827 | Potato | nucleus | 45.82 | 46.22 |
| Bra037817.1-P | Field mustard | nucleus | 37.18 | 45.74 |
| AT5G10440.1 | Thale cress | nucleus | 39.19 | 45.64 |
| Bra009031.1-P | Field mustard | nucleus | 38.62 | 45.12 |
| CDX69832 | Canola | nucleus | 38.62 | 45.12 |
| CDX97009 | Canola | nucleus | 38.04 | 45.05 |
| KXG19603 | Sorghum | nucleus | 44.67 | 44.54 |
| Bra024383.1-P | Field mustard | nucleus | 38.9 | 43.83 |
| AT2G22490.2 | Thale cress | nucleus | 45.53 | 43.65 |
| CDY08795 | Canola | nucleus | 38.62 | 43.51 |
| Solyc12g087900.1.1 | Tomato | nucleus | 39.48 | 43.35 |
| CDY14561 | Canola | cytosol | 40.06 | 42.77 |
| CDY33959 | Canola | nucleus | 37.46 | 42.62 |
| Bra031858.1-P | Field mustard | nucleus | 36.6 | 42.47 |
| PGSC0003DMT400088718 | Potato | nucleus | 37.75 | 42.26 |
| Bra030232.1-P | Field mustard | nucleus | 43.23 | 42.25 |
| CDY25602 | Canola | nucleus | 43.23 | 42.13 |
| CDX76917 | Canola | nucleus | 42.94 | 42.09 |
| CDY37828 | Canola | nucleus | 37.18 | 41.75 |
| CDX89480 | Canola | nucleus | 42.65 | 41.69 |
| PGSC0003DMT400041637 | Potato | nucleus | 44.96 | 39.59 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 31.41 | 36.82 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 31.12 | 35.64 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 25.65 | 35.46 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 37.18 | 35.15 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 29.97 | 34.21 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 28.24 | 32.67 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 35.45 | 32.28 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 35.45 | 31.62 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 21.04 | 30.17 |
| GSMUA_Achr10P... | Banana | cytosol | 21.9 | 30.04 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 22.77 | 28.73 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 22.48 | 28.06 |
| GSMUA_Achr10P... | Banana | nucleus | 23.05 | 27.97 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 24.78 | 27.04 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.34 | 25.55 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 28.53 | 25.52 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 25.36 | 25.51 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 23.34 | 25.31 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 26.22 | 25.14 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 29.11 | 24.82 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 27.95 | 23.83 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 28.53 | 23.46 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr8G23430_001 | EnsemblPlants:GSMUA_Achr8P23430_001 |
| EnsemblPlants:GSMUA_Achr8T23430_001 | UniProt:M0TSZ6 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF339 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000295DF78 | SEG:seg |
Description
Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23430_001]
Coordinates
chr8:+:27911143..27913384
Molecular Weight (calculated)
38142.6 Da
IEP (calculated)
4.682
GRAVY (calculated)
0.011
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSYDSASS ILLCAEDNSS IMSFGGDEEG GHGFDRVPEA KSLDFYGDLL VDFPLLSDEC IGSLVEKETE HMPRDDYAER LRSGALYLSI RRDAIDWIWK
101: VHAHYNFGPV SACLAVNYLD QFLSAYELPQ GKAWMTQLLS VACLSLAAKM EETEVPLSLD LQVGDAKYVF EARTIQRMEL LVLATLKWRM QAVTPFSFID
201: FFLHKFNGGN APSNLLVSRS VEVILITTQG TGSLAFRPSE IAAAIALSVL KETQTIELEK ALSCCSHVVK DGVLRCYEMI QDLMAARKEP LEIASPSVSS
301: LPQSPVGVLD AACLSYKIDG TVSGSHATCD YDSPASKRRK INRSSIS
101: VHAHYNFGPV SACLAVNYLD QFLSAYELPQ GKAWMTQLLS VACLSLAAKM EETEVPLSLD LQVGDAKYVF EARTIQRMEL LVLATLKWRM QAVTPFSFID
201: FFLHKFNGGN APSNLLVSRS VEVILITTQG TGSLAFRPSE IAAAIALSVL KETQTIELEK ALSCCSHVVK DGVLRCYEMI QDLMAARKEP LEIASPSVSS
301: LPQSPVGVLD AACLSYKIDG TVSGSHATCD YDSPASKRRK INRSSIS
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.