Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033588 | Potato | nucleus | 94.93 | 94.66 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 62.54 | 62.54 |
| KRH16827 | Soybean | nucleus | 60.56 | 60.56 |
| KRH72435 | Soybean | nucleus | 59.44 | 59.1 |
| KRH52917 | Soybean | nucleus | 56.62 | 57.1 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 39.44 | 56.22 |
| KRH62196 | Soybean | nucleus | 55.21 | 55.68 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 54.37 | 55.62 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 54.37 | 55.14 |
| Solyc12g087900.1.1 | Tomato | nucleus | 49.01 | 55.06 |
| GSMUA_Achr10P... | Banana | nucleus | 52.11 | 53.78 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 51.83 | 53.18 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 53.52 | 53.07 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 51.55 | 52.74 |
| GSMUA_Achr10P... | Banana | nucleus | 47.61 | 52.65 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 50.99 | 51.86 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 52.11 | 51.25 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.2 | 47.67 |
| TraesCS6B01G345300.1 | Wheat | plastid | 47.32 | 47.59 |
| Solyc11g010460.1.1 | Tomato | cytosol | 41.41 | 47.12 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 46.48 | 47.01 |
| Zm00001d052185_P001 | Maize | nucleus | 46.76 | 46.11 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 46.2 | 45.81 |
| Zm00001d018128_P001 | Maize | nucleus | 45.07 | 45.07 |
| EES07560 | Sorghum | nucleus | 45.07 | 44.69 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 29.3 | 41.27 |
| KXG19603 | Sorghum | nucleus | 38.03 | 38.79 |
| Solyc05g006050.2.1 | Tomato | nucleus | 34.08 | 35.91 |
| Solyc02g092980.2.1 | Tomato | nucleus | 36.06 | 35.65 |
| Solyc12g088650.1.1 | Tomato | nucleus | 30.42 | 33.23 |
| Solyc04g078470.2.1 | Tomato | nucleus | 30.14 | 31.85 |
| Solyc02g064860.1.1 | Tomato | nucleus | 20.56 | 31.06 |
| Solyc01g107730.2.1 | Tomato | nucleus | 31.83 | 31.04 |
| Solyc02g064900.1.1 | Tomato | nucleus | 30.14 | 30.92 |
| Solyc02g064910.1.1 | Tomato | nucleus | 20.28 | 30.64 |
| Solyc07g054950.1.1 | Tomato | nucleus | 26.48 | 30.32 |
| Solyc02g079370.2.1 | Tomato | nucleus | 23.94 | 28.62 |
| Solyc03g006670.2.1 | Tomato | nucleus | 23.38 | 26.69 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:K4BU43 | PFAM:PF00134 |
| PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF213 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc04g076040.2 | EnsemblPlants:Solyc04g076040.2.1 | UniParc:UPI0002765A63 | SEG:seg |
Description
No Description!
Coordinates
chr4:-:61004270..61006594
Molecular Weight (calculated)
39465.4 Da
IEP (calculated)
4.597
GRAVY (calculated)
-0.001
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSMDCAVS SLLCAEDNSS IFCNEDDDVG FGFVEEVVGE DIWYPRIHRN GQENRKLFNG DEFYTGVPLQ SDECLVLMIE KECEHMPAVD YLERLRNGDL
101: DIGARDEILD WIAKVHSQFN FGPMCAYLAV NYLDRFLSAY DLPKEKAWMM QLLGVACLSI AAKMEETDVP LSLDLQGGDA KFVFEAKTIQ RMELLVLTTL
201: KWRMQAITPF SYIDYFIKKI NNSDQISSIN KSVELILSTL KGINFLEFKP SVIAAAVAIS FAVKTETLDS EKALSALVQH VQKDKVMKCV ELIQALSLAS
301: DFVKVPIASS IPSVPQSPIG VLDAACLSYT SDGSGVESRS NSSHNSPVKR RKLNT
101: DIGARDEILD WIAKVHSQFN FGPMCAYLAV NYLDRFLSAY DLPKEKAWMM QLLGVACLSI AAKMEETDVP LSLDLQGGDA KFVFEAKTIQ RMELLVLTTL
201: KWRMQAITPF SYIDYFIKKI NNSDQISSIN KSVELILSTL KGINFLEFKP SVIAAAVAIS FAVKTETLDS EKALSALVQH VQKDKVMKCV ELIQALSLAS
301: DFVKVPIASS IPSVPQSPIG VLDAACLSYT SDGSGVESRS NSSHNSPVKR RKLNT
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQQERV KRCLNLMRSL TGEENVRGTS
301: LSQEQARVAV RAVPASPVGV LEATCLSYRS EERTVESCTN SSQSSPDNNN NNNNSNKRRR KQ
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.