Factsheet for Solyc04g078470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020648	Potato	nucleus	93.75	94.88
Solyc12g088650.1.1	Tomato	nucleus	63.1	65.23
VIT_18s0001g09920.t01	Wine grape	nucleus	57.14	51.61
KRH61348	Soybean	nucleus	51.79	49.86
KRH52038	Soybean	nucleus	50.3	46.69
Solyc01g107730.2.1	Tomato	nucleus	50.0	46.15
Solyc02g092980.2.1	Tomato	nucleus	45.83	42.9
Solyc02g064900.1.1	Tomato	nucleus	40.77	39.6
Solyc02g064910.1.1	Tomato	nucleus	26.19	37.45
Solyc02g064860.1.1	Tomato	nucleus	26.19	37.45
GSMUA_Achr1P09780_001	Banana	cytosol	38.39	33.25
GSMUA_Achr2P05260_001	Banana	nucleus	33.93	33.04
GSMUA_Achr4P20220_001	Banana	nucleus	34.23	31.77
GSMUA_Achr3P13140_001	Banana	nucleus	37.8	31.2
Solyc05g006050.2.1	Tomato	nucleus	30.65	30.56
Solyc04g076040.2.1	Tomato	nucleus	31.85	30.14
Solyc11g010460.1.1	Tomato	cytosol	27.38	29.49
TraesCS5D01G165900.1	Wheat	cytosol	30.95	29.38
TraesCS5B01G158400.1	Wheat	cytosol	30.95	29.38
TraesCS5A01G161000.1	Wheat	cytosol	30.95	29.38
HORVU5Hr1G050270.8	Barley	cytosol	30.36	29.06
GSMUA_AchrUn_...	Banana	cytosol	27.38	29.02
Solyc12g087900.1.1	Tomato	nucleus	27.08	28.8
GSMUA_Achr3P01010_001	Banana	nucleus	33.33	27.52
Solyc05g051410.2.1	Tomato	nucleus	27.68	27.03
Os09t0111100-01	Rice	cytosol	29.17	26.92
Zm00001d019696_P001	Maize	cytosol	30.36	26.36
Solyc02g079370.2.1	Tomato	nucleus	22.92	25.93
Zm00001d005293_P001	Maize	cytosol	29.76	25.58
EER96424	Sorghum	cytosol	28.57	25.13
Solyc07g054950.1.1	Tomato	nucleus	21.43	23.23
Solyc03g006670.2.1	Tomato	nucleus	21.43	23.15

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EMBL:AJ002590	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF342	UniProt:Q9SMD4	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc04g078470.2	EnsemblPlants:Solyc04g078470.2.1	UniParc:UPI00000A9AFE	SEG:seg

Description

CycD3;3 protein [Source:UniProtKB/TrEMBL;Acc:Q9SMD4]

Coordinates

chr4:-:63202571..63204421

Molecular Weight (calculated)

38689.2 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.187

Length

336 amino acids

Sequence
(BLAST)

001: MSHHYQEQEQ LEAQKIPFLL DSLYCEENNI LTEVSIETES FSSHDLLWEE EELTSLFSKE TEYEISYNVL EKNQSFISSR RESVEWILKT TAYYSFSAQT
101: GFLAVNYFDR FLLFSFNQSL NHKPWMNQLV AVTCLSLAAK VEETDVPLLL DLQVEESGFL FESKTIQRME MLILSTLKWK MNPVTPFSFL DFITRRLGLK
201: HCLSLEFLRR CEKVLLYTIT DDRFIGYLPS AMASATMLHV LDRLKPCIGE KYQDQLLGIL GIVKEKVEGC YRLIQEVACN IDFGSNKRKF GTLPGSPTGV
301: MDMSFSSDYS NDSWSVATSV TSSPEPLSKK IRESNE

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.