Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G161000.1 | Wheat | cytosol | 97.74 | 97.74 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 97.18 | 97.18 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 93.5 | 94.3 |
| Zm00001d019696_P001 | Maize | cytosol | 75.14 | 68.73 |
| Os09t0111100-01 | Rice | cytosol | 69.77 | 67.86 |
| EER96424 | Sorghum | cytosol | 72.6 | 67.28 |
| Zm00001d005293_P001 | Maize | cytosol | 73.16 | 66.24 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 45.2 | 41.24 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 40.68 | 39.78 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 37.85 | 38.84 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 33.33 | 38.19 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.62 | 37.54 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 42.37 | 36.85 |
| PGSC0003DMT400039904 | Potato | nucleus | 31.64 | 34.78 |
| Solyc12g088650.1.1 | Tomato | nucleus | 31.36 | 34.15 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 38.7 | 33.66 |
| PGSC0003DMT400020648 | Potato | nucleus | 31.07 | 33.13 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 35.31 | 32.38 |
| KRH05626 | Soybean | cytosol | 19.49 | 32.09 |
| KRH15412 | Soybean | cytosol | 23.73 | 31.11 |
| KRH28424 | Soybean | nucleus | 29.38 | 31.04 |
| Solyc04g078470.2.1 | Tomato | nucleus | 29.38 | 30.95 |
| PGSC0003DMT400066557 | Potato | nucleus | 31.07 | 30.73 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 32.2 | 30.65 |
| CDY30607 | Canola | nucleus | 30.51 | 30.59 |
| Bra036051.1-P | Field mustard | nucleus | 30.51 | 30.59 |
| CDY02095 | Canola | nucleus | 28.25 | 30.49 |
| Bra012909.1-P | Field mustard | nucleus | 28.25 | 30.49 |
| KRH04529 | Soybean | nucleus | 31.92 | 30.46 |
| CDX83112 | Canola | nucleus | 30.23 | 30.4 |
| Bra029992.1-P | Field mustard | nucleus | 30.23 | 30.4 |
| Solyc01g107730.2.1 | Tomato | nucleus | 31.07 | 30.22 |
| CDY17742 | Canola | nucleus | 30.23 | 30.14 |
| CDY57741 | Canola | nucleus | 31.07 | 30.14 |
| CDX68573 | Canola | nucleus | 29.94 | 30.11 |
| CDY23022 | Canola | nucleus | 27.97 | 30.09 |
| PGSC0003DMT400068629 | Potato | cytosol | 20.34 | 30.0 |
| CDX72453 | Canola | nucleus | 30.51 | 30.0 |
| CDX76265 | Canola | nucleus | 30.79 | 29.86 |
| CDY49278 | Canola | nucleus | 31.07 | 29.81 |
| Solyc02g092980.2.1 | Tomato | nucleus | 30.23 | 29.8 |
| KRH61348 | Soybean | nucleus | 29.38 | 29.8 |
| Solyc02g064860.1.1 | Tomato | nucleus | 19.77 | 29.79 |
| Solyc02g064910.1.1 | Tomato | nucleus | 19.77 | 29.79 |
| Solyc02g064900.1.1 | Tomato | nucleus | 29.1 | 29.77 |
| KRH57973 | Soybean | nucleus | 32.2 | 29.77 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 14.41 | 29.65 |
| KRH77050 | Soybean | nucleus, plastid | 27.97 | 29.64 |
| Bra017629.1-P | Field mustard | nucleus | 30.79 | 29.62 |
| Bra012146.1-P | Field mustard | nucleus | 29.38 | 29.38 |
| CDY01425 | Canola | nucleus | 29.38 | 29.38 |
| Bra034612.1-P | Field mustard | nucleus | 30.51 | 29.35 |
| CDY12825 | Canola | nucleus | 29.66 | 29.33 |
| KRH52038 | Soybean | nucleus | 29.94 | 29.28 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 29.1 | 29.26 |
| AT4G34160.1 | Thale cress | nucleus | 31.07 | 29.26 |
| Bra011501.1-P | Field mustard | nucleus | 30.79 | 29.22 |
| CDX75405 | Canola | nucleus | 30.79 | 29.22 |
| PGSC0003DMT400064307 | Potato | nucleus | 29.94 | 29.2 |
| CDY69708 | Canola | nucleus | 30.79 | 29.14 |
| AT3G50070.1 | Thale cress | nucleus | 29.66 | 29.09 |
| PGSC0003DMT400031329 | Potato | nucleus | 26.27 | 28.88 |
| KRG90996 | Soybean | nucleus | 31.64 | 28.5 |
| KRH35760 | Soybean | nucleus | 31.92 | 28.11 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 28.25 | 27.62 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 27.4 | 27.25 |
| PGSC0003DMT400011487 | Potato | nucleus | 14.12 | 27.17 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 25.99 | 26.74 |
| PGSC0003DMT400068627 | Potato | nucleus | 22.88 | 26.3 |
| AT5G67260.2 | Thale cress | nucleus | 29.94 | 26.24 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 24.58 | 25.82 |
| TraesCS2D01G171700.1 | Wheat | nucleus | 24.86 | 25.73 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 19.77 | 24.56 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 24.58 | 23.71 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 22.32 | 23.44 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 18.36 | 20.77 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 13.56 | 19.05 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G165900.1 | EnsemblPlantsGene:TraesCS5D01G165900 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF342 | PFAM:PF00134 | SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 |
| MapMan:13.1.1.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:257694057..257695329
Molecular Weight (calculated)
37552.5 Da
IEP (calculated)
4.621
GRAVY (calculated)
0.032
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAALFVDS LYCPEEHHDL FQEPAEEQWP EQQPLPLALD DELPALFEVF RGKEEVLMRE GGDGYGGDAR RQAAVGWATR AAARLGFSAL TAALAAAYLD
101: RCFLSGGALR LGDQPWMARL AAVACVALAA KVEETRVPVL LDLQLCAAES AGDADVFDAK TVRRMELLVL SALAWRMHPV TPFSFLHPVL AAARLRQCES
201: VLLAVMPDWS WPRYRPSAWA AAALLATAGY GSGDGDAELL ALINAPEDEV AECVKILSGE VAAGFIGFGG DNKRKRAAAG LHSPPLSPSG VIGAAAYFSC
301: ESSSSSADSR SGAATAWPGS VSVSSSPEPP GRPLKRATAT AMLPPDEESR DAWR
101: RCFLSGGALR LGDQPWMARL AAVACVALAA KVEETRVPVL LDLQLCAAES AGDADVFDAK TVRRMELLVL SALAWRMHPV TPFSFLHPVL AAARLRQCES
201: VLLAVMPDWS WPRYRPSAWA AAALLATAGY GSGDGDAELL ALINAPEDEV AECVKILSGE VAAGFIGFGG DNKRKRAAAG LHSPPLSPSG VIGAAAYFSC
301: ESSSSSADSR SGAATAWPGS VSVSSSPEPP GRPLKRATAT AMLPPDEESR DAWR
001: MALEEEEESQ NAPFCVLDGL FCEEESEFHE QVDLCDESVE KFPFLNLGLS DHDMLWDDDE LSTLISKQEP CLYDEILDDE FLVLCREKAL DWIFKVKSHY
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
101: GFNSLTALLA VNYFDRFITS RKFQTDKPWM SQLTALACLS LAAKVEEIRV PFLLDFQVEE ARYVFEAKTI QRMELLVLST LDWRMHPVTP ISFFDHIIRR
201: YSFKSHHQLE FLSRCESLLL SIIPDSRFLS FSPSVLATAI MVSVIRDLKM CDEAVYQSQL MTLLKVDSEK VNKCYELVLD HSPSKKRMMN WMQQPASPIG
301: VFDASFSSDS SNESWVVSAS ASVSSSPSSE PLLKRRRVQE QQMRLSSINR MFFDVLSSSP R
Arabidopsis Description
CYCD3-3CYCD3 [Source:UniProtKB/TrEMBL;Acc:A0A178VE15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.